Evidence map›Paper›PMID 27528618›Full record

ArticleMolecular and cellular biology2016

The Evolutionarily-conserved Polyadenosine RNA Binding Protein, Nab2, Cooperates with Splicing Machinery to Regulate the Fate of pre-mRNA.

Sharon Soucek, Yi Zeng, Deepti L Bellur, Megan Bergkessel, Kevin J Morris, Qiudong Deng, Duc Duong, Nicholas T Seyfried, Christine Guthrie, Jonathan P Staley and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 81 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Sharon SoucekGraduate Program in Biochemistry, Cell, and Developmental Biology, Emory University School of Medicine, Atlanta, GA, USA Department of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA.
Yi ZengGraduate Program in Cell and Molecular Biology, The University of Chicago, Chicago, IL, USA Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA.
Deepti L BellurDepartment of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA.
Megan BergkesselDivision of Geological and Planetary Sciences California Institute of Technology, Pasadena, California, USA Department of Biochemistry and Biophysics, University of California, San Francisco, California, USA.
Kevin J MorrisGraduate Program in Biochemistry, Cell, and Developmental Biology, Emory University School of Medicine, Atlanta, GA, USA Department of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA.
Qiudong DengDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA Center for Neurodegenerative Disease, Emory University School of Medicine, Atlanta, GA, USA.
Duc DuongDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA Center for Neurodegenerative Disease, Emory University School of Medicine, Atlanta, GA, USA.
Nicholas T SeyfriedDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA Center for Neurodegenerative Disease, Emory University School of Medicine, Atlanta, GA, USA.
Christine GuthrieDepartment of Biochemistry and Biophysics, University of California, San Francisco, California, USA.
Jonathan P StaleyDepartment of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA.
Milo B FaskenDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA acorbe2@emory.edu mfasken@emory.edu.
Anita H CorbettDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA acorbe2@emory.edu mfasken@emory.edu.
University of Chicago · USEmory University · USUniversity of California, San Francisco · USCalifornia Institute of Technology · US

Funding

BIOSYNTHESIS OF RNASR01GM021119 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GUTHRIE, CHRISTINE · 1985 to 2015
$12.9M
MOLECULAR BASIS OF RAN MEDIATED NUCLEAR TRANSPORTR01GM058728 · NIGMS · EMORY UNIVERSITY · PI CORBETT, ANITA H. · 1999 to 2016
$5.4M
Mechanisms for Rearranging RNA during Pre-mRNA Splicing - Renewal 01R01GM062264 · NIGMS · UNIVERSITY OF CHICAGO · PI STALEY, JONATHAN P · 2001 to 2019
$5.3M
BIOSYNTHESIS OF RNASR37GM021119 · NIGMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI GUTHRIE, CHRISTINE · 1990 to 1999
–
NIGMS NIH HHS R01 GM021119NIGMS NIH HHS R01 GM058728NIGMS NIH HHS R01 GM062264NIGMS NIH HHS R37 GM021119
6 · The paper itself

Abstract

Numerous RNA binding proteins are deposited onto an mRNA transcript to modulate post-transcriptional processing events ensuring proper mRNA maturation. Defining the interplay between RNA binding proteins that couple mRNA biogenesis events is crucial for understanding how gene expression is regulated. To explore how RNA binding proteins control mRNA processing, we investigated a role for the evolutionarily conserved polyadenosine RNA binding protein, Nab2, in mRNA maturation within the nucleus. This work reveals that nab2 mutant cells accumulate intron-containing pre-mRNA in vivo We extend this analysis to identify genetic interactions between mutant alleles of nab2 and genes encoding the splicing factor, MUD2, and the RNA exosome, RRP6, with in vivo consequences of altered pre-mRNA splicing and poly(A) tail length control. As further evidence linking Nab2 proteins to splicing, an unbiased proteomic analysis of vertebrate Nab2, ZC3H14, identifies physical interactions with numerous components of the spliceosome. We validated the interaction between ZC3H14 and U2AF2/U2AF

Identifiers

PMID27528618
PMCPMC5064217
OpenAlexW2509514499

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.