ArticlePlant physiology2016
3D Sorghum Reconstructions from Depth Images Identify QTL Regulating Shoot Architecture.
Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.
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Who cites it
38 citing papers in PubMed, 116 citations in OpenAlex.
- Integrating 3D phenotyping and functional-structural plant models for crop ideotype breeding.Nature communications · 2026Review
- Three-dimensional phenotyping: Technological advances and applications in genomics-assisted crop breeding.Plant communications · 2026Review
- Genome-wide association study of the reproductive, body size, and carcass-related latent and directly measured traits in admixed beef heifers.Frontiers in genetics · 2026Article
- High-fidelity wheat plant reconstruction using 3D Gaussian splatting and neural radiance fields.GigaScience · 2025Article
- Multi-trait phenotypic modeling through factor analysis and bayesian network learning to develop latent reproductive, body conformational, and carcass-associated traits in admixed beef heifers.Frontiers in genetics · 2025Article
- A Novel Method for Quantifying Plant Morphological Characteristics Using Normal Vectors and Local Curvature Data via 3D Modelling-A Case Study in Leaf Lettuce.Sensors (Basel, Switzerland) · 2023Article
- How to make sense of 3D representations for plant phenotyping: a compendium of processing and analysis techniques.Plant methods · 2023Review
- High-Throughput Field Plant Phenotyping: A Self-Supervised Sequential CNN Method to Segment Overlapping Plants.Plant phenomics (Washington, D.C.) · 2023Article
- A Strategy for the Acquisition and Analysis of Image-Based Phenome in Rice during the Whole Growth Period.Plant phenomics (Washington, D.C.) · 2023Article
- LiDAR Platform for Acquisition of 3D Plant Phenotyping Database.Plants (Basel, Switzerland) · 2022Article
- Dissection of canopy layer-specific genetic control of leaf angle in Sorghum bicolor by RNA sequencing.BMC genomics · 2022Article
- A miniaturized phenotyping platform for individual plants using multi-view stereo 3D reconstruction.Frontiers in plant science · 2022Article
- CBM: An IoT Enabled LiDAR Sensor for In-Field Crop Height and Biomass Measurements.Biosensors · 2021Article
- Resources for image-based high-throughput phenotyping in crops and data sharing challenges.Plant physiology · 2021Article
- Classical phenotyping and deep learning concur on genetic control of stomatal density and area in sorghum.Plant physiology · 2021Article
- 3D reconstruction identifies loci linked to variation in angle of individual sorghum leaves.PeerJ · 2021Article
- KAT4IA:Plant phenomics (Washington, D.C.) · 2021Article
- Toward "Smart Canopy" Sorghum: Discovery of the Genetic Control of Leaf Angle Across Layers.Plant physiology · 2020Article
- Voxel carving-based 3D reconstruction of sorghum identifies genetic determinants of light interception efficiency.Plant direct · 2020Article
- MVS-Pheno: A Portable and Low-Cost Phenotyping Platform for Maize Shoots Using Multiview Stereo 3D Reconstruction.Plant phenomics (Washington, D.C.) · 2020Article
Corrections and comments
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Dissecting the genetic basis of complex traits is aided by frequent and nondestructive measurements. Advances in range imaging technologies enable the rapid acquisition of three-dimensional (3D) data from an imaged scene. A depth camera was used to acquire images of sorghum (Sorghum bicolor), an important grain, forage, and bioenergy crop, at multiple developmental time points from a greenhouse-grown recombinant inbred line population. A semiautomated software pipeline was developed and used to generate segmented, 3D plant reconstructions from the images. Automated measurements made from 3D plant reconstructions identified quantitative trait loci for standard measures of shoot architecture, such as shoot height, leaf angle, and leaf length, and for novel composite traits, such as shoot compactness. The phenotypic variability associated with some of the quantitative trait loci displayed differences in temporal prevalence; for example, alleles closely linked with the sorghum Dwarf3 gene, an auxin transporter and pleiotropic regulator of both leaf inclination angle and shoot height, influence leaf angle prior to an effect on shoot height. Furthermore, variability in composite phenotypes that measure overall shoot architecture, such as shoot compactness, is regulated by loci underlying component phenotypes like leaf angle. As such, depth imaging is an economical and rapid method to acquire shoot architecture phenotypes in agriculturally important plants like sorghum to study the genetic basis of complex traits.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.