Evidence map›Paper›PMID 27528034›Full record

ArticleOncotarget2016

Waking up dormant tumor suppressor genes with zinc fingers, TALEs and the CRISPR/dCas9 system.

Benjamin Garcia-Bloj, Colette Moses, Agustin Sgro, Janice Plani-Lam, Mahira Arooj, Ciara Duffy, Shreyas Thiruvengadam, Anabel Sorolla, Rabab Rashwan, Ricardo L Mancera and 4 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 88 citations in OpenAlex.

  1. Review
  2. Advances and clinical potential of epigenome editing.Cellular and molecular life sciences : CMLS · 2026
    Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Review
  8. Extrinsic induction of apoptosis and tumor suppression via the p53-Reprimo-Hippo-YAP/TAZ-p73 pathway.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. On RNA-programmable gene modulation as a versatile set of principles targeting muscular dystrophies.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Review
  10. Harnessing the evolving CRISPR/Cas9 for precision oncology.Journal of translational medicine · 2024
    Review
  11. Review
  12. Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Benjamin Garcia-BlojCancer Epigenetics group, The Harry Perkins Institute of Medical Research, Perth, WA, 6009, Australia.
Colette MosesCancer Epigenetics group, The Harry Perkins Institute of Medical Research, Perth, WA, 6009, Australia.
Agustin SgroCancer Epigenetics group, The Harry Perkins Institute of Medical Research, Perth, WA, 6009, Australia.
Janice Plani-LamCancer Epigenetics group, The Harry Perkins Institute of Medical Research, Perth, WA, 6009, Australia.
Mahira AroojCancer Epigenetics group, The Harry Perkins Institute of Medical Research, Perth, WA, 6009, Australia.
Ciara DuffyCancer Epigenetics group, The Harry Perkins Institute of Medical Research, Perth, WA, 6009, Australia.
Shreyas ThiruvengadamCancer Epigenetics group, The Harry Perkins Institute of Medical Research, Perth, WA, 6009, Australia.
Anabel SorollaCancer Epigenetics group, The Harry Perkins Institute of Medical Research, Perth, WA, 6009, Australia.
Rabab RashwanCancer Epigenetics group, The Harry Perkins Institute of Medical Research, Perth, WA, 6009, Australia.
Ricardo L ManceraSchool of Biomedical Sciences, Curtin Health Innovation Research Institute, Curtin University, Perth WA 6845, Australia.
Andrea LeisewitzFaculty of Medicine, School of Medicine, Pontificia Universidad Catolica de Chile, Santiago, RM, 8330034, Chile.
Theresa Swift-ScanlanSchool of Nursing, Virginia Commonwealth University, Richmond, Virginia, 23298, USA.
Alejandro H CorvalanAdvanced Center for Chronic Diseases (ACCDiS), Pontificia Universidad Católica de Chile, Santiago, RM, 8330034, Chile.
Pilar BlancafortCancer Epigenetics group, The Harry Perkins Institute of Medical Research, Perth, WA, 6009, Australia.
Harry Perkins Institute of Medical Research · AUCurtin University · AUPontificia Universidad Católica de Chile · CLUniversity of Western Australia · AUVirginia Commonwealth University · US

Funding

Targeted epigenetic silencing of oncogenic Transcription Factors (PQ18)R01CA170370 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BLANCAFORT, PILAR · 2012 to 2015
$900k
Precision engineering of DNA methylation patterns in the human genomeR01DA036906 · NIDA · UNIVERSITY OF WESTERN AUSTRALIA · PI BLANCAFORT, PILAR, LISTER, RYAN · 2013 to 2014
$350k
NCI NIH HHS R01 CA170370NIDA NIH HHS R01 DA036906
6 · The paper itself

Abstract

The aberrant epigenetic silencing of tumor suppressor genes (TSGs) plays a major role during carcinogenesis and regaining these dormant functions by engineering of sequence-specific epigenome editing tools offers a unique opportunity for targeted therapies. However, effectively normalizing the expression and regaining tumor suppressive functions of silenced TSGs by artificial transcription factors (ATFs) still remains a major challenge. Herein we describe novel combinatorial strategies for the potent reactivation of two class II TSGs, MASPIN and REPRIMO, in cell lines with varying epigenetic states, using the CRISPR/dCas9 associated system linked to a panel of effector domains (VP64, p300, VPR and SAM complex), as well as with protein-based ATFs, Zinc Fingers and TALEs. We found that co-delivery of multiple effector domains using a combination of CRISPR/dCas9 and TALEs or SAM complex maximized activation in highly methylated promoters. In particular, CRISPR/dCas9 VPR with SAM upregulated MASPIN mRNA (22,145-fold change) in H157 lung cancer cells, with accompanying re-expression of MASPIN protein, which led to a concomitant inhibition of cell proliferation and induction of apoptotic cell death. Consistently, CRISPR/dCas9 VP64 with SAM upregulated REPRIMO (680-fold change), which led to phenotypic reprogramming in AGS gastric cancer cells. Altogether, our results outlined novel sequence-specific, combinatorial epigenome editing approaches to reactivate highly methylated TSGs as a promising therapy for cancer and other diseases.

Indexed as

ApoptosisCell Cycle ProteinsCell Line, TumorCell ProliferationCRISPR-Cas SystemsDNA MethylationEpigenesis, GeneticGene Expression Regulation, NeoplasticGlycoproteinsHomeodomain ProteinsHumansLung NeoplasmsRepressor ProteinsRNA, Long NoncodingSerpinsSterile Alpha MotifCell Cycle ProteinsGlycoproteinsHomeodomain Proteinslong noncoding RNA CASC9, humanRepressor ProteinsRNA, Long NoncodingRPRM protein, humanSERPIN-B5SerpinsTGIF1 protein, humanTumor Suppressor ProteinsCRISPR/dCas9gene reactivationTALEtumor suppressor genesZF

Identifiers

PMID27528034
PMCPMC5312401
OpenAlexW2519551846

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.