Evidence map›Paper›PMID 27527109›Full record

ArticleThe pharmacogenomics journal2017

HLA-B*51:01 is strongly associated with clindamycin-related cutaneous adverse drug reactions.

Y Yang, S Chen, F Yang, L Zhang, G Alterovitz, H Zhu, J Xuan, X Yang, H Luo, J Mu and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in The pharmacogenomics journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Frontiers in pharmacology · 2024
    Article
  5. Novel Therapeutics for Malaria.Pharmaceutics · 2023
    Review
  6. Distribution ofFrontiers in pharmacology · 2022
    Article
  7. The Immunogenetics of Cutaneous Drug Reactions.Advances in experimental medicine and biology · 2022
    Article
  8. Pharmacogenomics of Antibiotics.International journal of molecular sciences · 2020
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Y YangChildren's Hospital & Institutes of Biomedical Sciences, Fudan University, Shanghai, China.
S ChenHuashan Hospital, Fudan University, Shanghai, China.
F YangHuashan Hospital, Fudan University, Shanghai, China.
L ZhangDepartment of Pharmacology, School of Medicine, Zhengzhou University, Zhengzhou, China.
G AlterovitzChildren's Hospital Informatics Program, Boston, MA, USA.
H ZhuChildren's Hospital & Institutes of Biomedical Sciences, Fudan University, Shanghai, China.
J XuanChildren's Hospital & Institutes of Biomedical Sciences, Fudan University, Shanghai, China.
X YangSchool of Pharmacy, Fudan University, Shanghai, China.
H LuoUniversity of Arkansas at Little Rock/University of Arkansas for Medical Sciences Joint Bioinformatics Program, Little Rock, AR, USA.
J MuChildren's Hospital & Institutes of Biomedical Sciences, Fudan University, Shanghai, China.
L HeChildren's Hospital & Institutes of Biomedical Sciences, Fudan University, Shanghai, China.
X LuoHuashan Hospital, Fudan University, Shanghai, China.
Q XingChildren's Hospital & Institutes of Biomedical Sciences, Fudan University, Shanghai, China.
Children's Hospital of Fudan University · CNHuashan Hospital · CNFudan University · CNMassachusetts Institute of Technology · USUniversity of Arkansas at Little Rock · USZhengzhou University · CN

Funding

A Holistic Approach to Information Processing for Biomedical NetworksR00LM009826 · NLM · BOSTON CHILDREN'S HOSPITAL · PI ALTEROVITZ, GIL · 2010 to 2012
$727k
NLM NIH HHS R00 LM009826
6 · The paper itself

Abstract

Clindamycin causes cutaneous adverse drug reactions (cADRs), sometimes with the mechanisms of pathogenicity or risk factors unknown. This study aims to assess whether HLA alleles are associated with clindamycin-related cADRs in the Han Chinese population. We performed an association study of 12 subjects with clindamycin-related cADRs, 279 controls and 26 clindamycin-tolerant subjects. Subjects who received clindamycin through intravenous drip were analyzed separately. Unbiased, in silico docking was conducted. We found 6 out of 12 clindamycin-induced cADR patients carried HLA-B*51:01, and all of them received clindamycin via intravenous drip (6/9). The carrier frequency of HLA-B*51:01 is significantly higher compared with the control group (P=0.0006; OR=9.731, 95% CI: 2.927-32.353) and the clindamycin-tolerant group (OR=24.000, 95% CI: 3.247-177.405). In silico docking showed clindamycin is potentially more stable inside HLA-B*51:01 protein. Our results suggested, for the first time, that HLA-B*51:01 is a risk allele for clindamycin-related cADRs in Han Chinese, especially when clindamycin is administered via intravenous drip.

Indexed as

Anti-Bacterial AgentsAsian PeopleClindamycinComputer SimulationDrug EruptionsGene FrequencyGenetic Predisposition to DiseaseGenotypeHLA-B51 AntigenHumansInfusions, IntravenousMolecular Docking SimulationPharmacogenomic TestingPharmacogenomic VariantsProtein BindingAnti-Bacterial AgentsClindamycinHLA-B51 Antigen

Identifiers

PMID27527109
OpenAlexW2507246401

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.