Evidence map›Paper›PMID 27525066›Full record

ArticleClinical & translational immunology2016

Repertoire comparison of the B-cell receptor-encoding loci in humans and rhesus macaques by next-generation sequencing.

Vladimir Vigdorovich, Brian G Oliver, Sara Carbonetti, Nicholas Dambrauskas, Miles D Lange, Christina Yacoob, Will Leahy, Jonathan Callahan, Leonidas Stamatatos, D Noah Sather

Open access · goldAbstract read
In one paragraph

Article in Clinical & translational immunology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 49 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Vladimir VigdorovichCenter for Infectious Disease Research (formerly Seattle BioMed) , Seattle, WA, USA.ORCID 0000-0003-4195-4858
Brian G OliverCenter for Infectious Disease Research (formerly Seattle BioMed) , Seattle, WA, USA.
Sara CarbonettiCenter for Infectious Disease Research (formerly Seattle BioMed) , Seattle, WA, USA.
Nicholas DambrauskasCenter for Infectious Disease Research (formerly Seattle BioMed) , Seattle, WA, USA.
Miles D LangeCenter for Infectious Disease Research (formerly Seattle BioMed) , Seattle, WA, USA.
Christina YacoobFred Hutchinson Cancer Research Center, Viral and Infectious Disease Division , Seattle, WA, USA.
Will LeahyMazama Science , Seattle, WA, USA.
Jonathan CallahanMazama Science , Seattle, WA, USA.
Leonidas StamatatosFred Hutchinson Cancer Research Center, Viral and Infectious Disease Division , Seattle, WA, USA.
D Noah SatherCenter for Infectious Disease Research (formerly Seattle BioMed) , Seattle, WA, USA.
Center for Infectious Disease Research · USFred Hutch Cancer Center · USNorthwest African American Museum · USMolina Center for Energy and the Environment · US

Funding

Defining BCR evolution during immunizationR01AI104384 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STAMATATOS, LEONIDAS · 2013 to 2021
$5.9M
Novel HIV 1 Envelope immunogens derived from broadly neutralizing plasmasR33AI089405 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI SATHER, D. NOAH · 2012 to 2014
$1.7M
NIAID NIH HHS R01 AI104384NIAID NIH HHS R33 AI089405
6 · The paper itself

Abstract

Rhesus macaques (RMs) are a widely used model system for the study of vaccines, infectious diseases and microbial pathogenesis. Their value as a model lies in their close evolutionary relationship to humans, which, in theory, allows them to serve as a close approximation of the human immune system. However, despite their prominence as a human surrogate model system, many aspects of the RM immune system remain ill characterized. In particular, B cell-mediated immunity in macaques has not been sufficiently characterized, and the B-cell receptor-encoding loci have not been thoroughly annotated. To address these gaps, we analyzed the circulating heavy- and light-chain repertoires in humans and RMs by next-generation sequencing. By comparing V gene segment usage, J-segment usage and CDR3 lengths between the two species, we identified several important similarities and differences. These differences were especially notable in the IgM(+) B-cell repertoire. However, the class-switched, antigen-educated B-cell populations converged on a set of similar characteristics, implying similarities in how each species responds to antigen. Our study provides the first comprehensive overview of the circulating repertoires of the heavy- and light-chain sequences in RMs, and provides insight into how they may perform as a model system for B cell-mediated immunity in humans.

Identifiers

PMID27525066
PMCPMC4973324
OpenAlexW2489110992

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.