Evidence map›Paper›PMID 27525043›Full record

ArticleMolecular cytogenetics2016

Genome wide array-CGH and qPCR analysis for the identification of genome defects in Williams' syndrome patients in Saudi Arabia.

I R Hussein, A Magbooli, E Huwait, A Chaudhary, R Bader, M Gari, F Ashgan, M Alquaiti, A Abuzenadah, M AlQahtani

Open access · goldAbstract read
In one paragraph

Article in Molecular cytogenetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

I R HusseinCentre of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, 21589 KSA Saudi Arabia.
A Magbooli *Diagnostic Genomic Medicine Unit (DGMU), King Abdulaziz University, Jeddah, KSA Saudi Arabia.
E Huwait *Faculty of Science, King Abdulaziz University, Jeddah, KSA Saudi Arabia.
A Chaudhary *Centre of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, 21589 KSA Saudi Arabia.
R Bader *Pediatric Cardiology Department, King Abdulaziz University, Jeddah, KSA Saudi Arabia.
M Gari *Centre of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, 21589 KSA Saudi Arabia.
F Ashgan *Centre of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, 21589 KSA Saudi Arabia.
M Alquaiti *Centre of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, 21589 KSA Saudi Arabia.
A Abuzenadah *Centre of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, 21589 KSA Saudi Arabia.
M AlQahtani *Centre of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, 21589 KSA Saudi Arabia.
King Abdulaziz University · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWilliams-Beuren Syndrome (WBS) is a rare neurodevelopmental disorder characterized by dysmorphic features, cardiovascular defects, cognitive deficits and developmental delay. WBS is caused by a segmental aneuploidy of chromosome 7 due to heterozygous deletion of contiguous genes at the long arm of chromosome 7q11.23. We aimed to apply array-CGH technique for the detection of copy number variants in suspected WBS patients and to determine the size of the deleted segment at chromosome 7q11.23 in correlation with the phenotype. The study included 24 patients referred to the CEGMR with the provisional diagnosis of WBS and 8 parents. The patients were subjected to conventional Cytogenetic (G-banding) analysis, Molecular Cytogenetic (Fluorescent In-Situ Hybridization), array-based Comparative Genomic Hybridization (array-CGH) and quantitative Real time PCR (qPCR) Techniques.

resultsNo deletions were detected by Karyotyping, however, one patient showed unbalanced translocation between chromosome 18 and 19, the karyotype was 45,XX, der(19) t(18;19)(q11.1;p13.3)-18. FISH technique could detect microdeletion in chromosome 7q11.23 in 10/24 patients. Array-CGH and qPCR confirmed the deletion in all samples, and could detect duplication of 7q11.23 in three patients and two parents. Furthermore, the size of the deletion could be detected accurately by both array-CGH and qPCR techniques. Three patients not showing the 7q11.23 deletion were diagnosed by array-CGH to have deletion in chr9p13.1-p11.2, chr18p11.32-p11.21 and chr1p36.13.

conclusionBoth FISH and array-CGH are reliable methods for the diagnosis of WBS; however, array-CGH has the advantage of detection of genome deletions/ duplications that cannot otherwise be detected by conventional cytogenetic techniques. Array-CGH and qPCR are useful for detection of deletion sizes and prediction of the interrupted genes and their impact on the disease phenotype. Further investigations are needed for studying the impact of deletion sizes and function of the deleted genes on chromosome 7q11.23.

trial registrationISRCTN ISRCTN73824458. MOCY-D-16-00041R1. Registered 28 September 2014. Retrospectively registered.

Indexed as

Array-CGHCongenital heart defectsFISHqPCRWilliams Syndrome

Identifiers

PMID27525043
PMCPMC4981984
OpenAlexW2510650860

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.