ArticleFrontiers in plant science2016
Population Structure and Genotype-Phenotype Associations in a Collection of Oat Landraces and Historic Cultivars.
Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- GWAS and genomic prediction of crown rust resistance in the southern US elite oat (Avena sativa L.) germplasm.The plant genome · 2026Article
- Global genomic population structure of wild and cultivated oat reveals signatures of chromosome rearrangements.Nature communications · 2025Article
- A global assembly of landrace oat (Avena sativa L.) accessions is a discovery resource for adaptive variation, association mapping, and trait deployment.G3 (Bethesda, Md.) · 2025Article
- Genetic dissection of crown rust resistance in oat and the identification of key adult plant resistance genes.The plant genome · 2025Article
- Abiotic stress responses in forage crops and grasses: the role of secondary metabolites and biotechnological interventions.Frontiers in plant science · 2025Review
- Novel Alleles fromInternational journal of molecular sciences · 2024Article
- Utilizing Genomics to Characterize the Common Oat Gene Pool-The Story of More Than a Century of Polish Breeding.International journal of molecular sciences · 2023Article
- Population structure analysis and genome-wide association study of a hexaploid oat landrace and cultivar collection.Frontiers in plant science · 2023Article
- Phenotypic and genetic characterization of anFrontiers in plant science · 2023Article
- OMICS in Fodder Crops: Applications, Challenges, and Prospects.Current issues in molecular biology · 2022Review
- Breeding oat for resistance to the crown rust pathogen Puccinia coronata f. sp. avenae: achievements and prospects.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Review
- GrainGenes: a data-rich repository for small grains genetics and genomics.Database : the journal of biological databases and curation · 2022Article
- Genomic prediction and training set optimization in a structured Mediterranean oat population.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Genome-Wide Association Study Reveals the Genetic Architecture of Seed Vigor in Oats.G3 (Bethesda, Md.) · 2020Article
- Genetic diversity and genome-wide association analysis in Chinese hulless oat germplasm.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Genome-wide association mapping of Fusarium langsethiae infection and mycotoxin accumulation in oat (Avena sativa L.).The plant genome · 2020Article
- Chromosomal location of the crown rust resistance gene Pc98 in cultivated oat (Avena sativa L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Mapping crown rust resistance at multiple time points in elite oat germplasm.The plant genome · 2020Article
- Multi-Environmental Trials Reveal Genetic Plasticity of Oat Agronomic Traits Associated With Climate Variable Changes.Frontiers in plant science · 2018Article
- Insights into the genetic relationships among plants of Beta section Beta using SNP markers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
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6 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Population structure and genetic architecture of phenotypic traits in oat (Avena sativa L.) remain relatively under-researched compared to other small grain species. This study explores the historic context of current elite germplasm, including phenotypic and genetic characterization, with a particular focus on identifying under-utilized areas. A diverse panel of cultivated oat accessions was assembled from the USDA National Small Grains Collection to represent a gene pool relatively unaffected by twentieth century breeding activity and unlikely to have been included in recent molecular studies. The panel was genotyped using an oat iSelect 6K beadchip SNP array. The final dataset included 759 unique individuals and 2,715 polymorphic markers. Some population structure was apparent, with the first three principal components accounting for 38.8% of variation and 73% of individuals belonging to one of three clusters. One cluster with high genetic distinctness appears to have been largely overlooked in twentieth century breeding. Classification and phenotype data provided by the Germplasm Resources Information Network were evaluated for their relationship to population structure. Of the structuring variables evaluated, improvement status (cultivar or landrace) was relatively unimportant, indicating that landraces and cultivars included in the panel were all sampled from a similar underlying population. Instead, lemma color and region of origin showed the strongest explanatory power. An exploratory association mapping study of the panel using a subset of 2,588 mapped markers generated novel indications of genomic regions associated with awn frequency, kernels per spikelet, lemma color, and panicle type. Further results supported previous findings of loci associated with barley yellow dwarf virus tolerance, crown rust (caused by Puccinia coronata f. sp. avenae) resistance, days to anthesis, and growth habit (winter/spring). In addition, two novel loci were identified for crown rust resistance.
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