Evidence map›Paper›PMID 27520284›Full record

ArticleBiologicals : journal of the International Association of Biological Standardization2016

Evaluation of a microfluidic chip system for preparation of bacterial DNA from swabs, air, and surface water samples.

Sandra Julich, Helmut Hotzel, Claudia Gärtner, Daniel Trouchet, Marwa Fawzy El Metwaly Ahmed, Nicole Kemper, Herbert Tomaso

Open access · hybridAbstract read
In one paragraph

Article in Biologicals : journal of the International Association of Biological Standardization, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Sandra JulichFriedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Bacterial Infections and Zoonoses, Naumburger Straße 96a, 07743 Jena, Germany.
Helmut HotzelFriedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Bacterial Infections and Zoonoses, Naumburger Straße 96a, 07743 Jena, Germany.
Claudia Gärtnermicrofluidic ChipShop, Stockholmer Straße 20, 07747 Jena, Germany.
Daniel TrouchetBertin Technologies, 10 Avenue André Marie Ampére, 78180 Montigny-le-Bretonneux, France.
Marwa Fawzy El Metwaly AhmedMansoura University, Faculty of Veterinary Medicine, Department of Animal Hygiene and Zoonoses, 60 El Gomhoria Street, 35516 Mansoura, Egypt.
Nicole KemperUniversity of Veterinary Medicine Hannover, Foundation, Institute of Animal Hygiene, Animal Welfare and Farm Animal Behaviour, Bischofsholer Damm 15, 30173 Hannover, Germany.
Herbert TomasoFriedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Bacterial Infections and Zoonoses, Naumburger Straße 96a, 07743 Jena, Germany. Electronic address: herbert.tomaso@fli.bund.de.
Friedrich-Loeffler-Institut · DEMansoura University · EGMicrofluidic ChipShop (Germany) · DEUniversity of Veterinary Medicine Hannover, Foundation · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The detection of bacterial pathogens from complex sample matrices by PCR requires efficient DNA extraction. In this study, a protocol for extraction and purification of DNA from swabs, air, and water samples using a microfluidic chip system was established. The optimized protocol includes a combination of thermal, chemical and enzymatic lysis followed by chip-based DNA purification using magnetic particles. The procedure was tested using Gram-positive Bacillus thuringiensis Berliner var. kurstaki as a model organism for Bacillus anthracis and the attenuated live vaccine strain of Francisella tularensis subsp. holarctica as Gram-negative bacterium. The detection limits corresponded to 10

Indexed as

Air MicrobiologyLab-On-A-Chip DevicesWater MicrobiologyBacteriaDNA, BacterialDNA, BacterialBacillus thuringiensisCampylobacterDNA preparationEnvironmental samplesFrancisella tularensisMicrofluidic chips

Identifiers

PMID27520284
PMCPMC5119575
OpenAlexW2513541092

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.