Evidence map›Paper›PMID 27519859›Full record

ArticleBMC genomics2016

Engineering high Zn in tomato shoots through expression of AtHMA4 involves tissue-specific modification of endogenous genes.

Maria Kendziorek, Maria Klimecka, Anna Barabasz, Sören Borg, Justyna Rudzka, Paweł Szczęsny, Danuta Maria Antosiewicz

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Functional Analysis ofFrontiers in plant science · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Maria KendziorekFaculty of Biology, Institute of Experimental Plant Biology and Biotechnology, Department of Plant Anatomy and Cytology, University of Warsaw, Miecznikowa str 1, 02-096, Warszawa, Poland.
Maria KlimeckaFaculty of Biology, Institute of Experimental Plant Biology and Biotechnology, Department of Plant Anatomy and Cytology, University of Warsaw, Miecznikowa str 1, 02-096, Warszawa, Poland.
Anna BarabaszFaculty of Biology, Institute of Experimental Plant Biology and Biotechnology, Department of Plant Anatomy and Cytology, University of Warsaw, Miecznikowa str 1, 02-096, Warszawa, Poland.
Sören BorgDepartment. of Molecular Biology and Genetics, Aarhus University, Forsøgsvej 1, 4200, Slagelse, Denmark.
Justyna RudzkaFaculty of Biology, Institute of Experimental Plant Biology and Biotechnology, Department of Plant Anatomy and Cytology, University of Warsaw, Miecznikowa str 1, 02-096, Warszawa, Poland.
Paweł SzczęsnyInstitute of Biochemistry and Biophysics PAS, Pawińskiego 5a, 02-106, Warszawa, Poland.
Danuta Maria AntosiewiczFaculty of Biology, Institute of Experimental Plant Biology and Biotechnology, Department of Plant Anatomy and Cytology, University of Warsaw, Miecznikowa str 1, 02-096, Warszawa, Poland. dma@biol.uw.edu.pl.ORCID 0000-0003-4921-0378
University of Warsaw · PLInstitute of Biochemistry and Biophysics, Polish Academy of Sciences · PLAarhus University · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTo increase the Zn level in shoots, AtHMA4 was ectopically expressed in tomato under the constitutive CaMV 35S promoter. However, the Zn concentration in the shoots of transgenic plants failed to increase at all tested Zn levels in the medium. Modification of Zn root/shoot distribution in tomato expressing 35S::AtHMA4 depended on the concentration of Zn in the medium, thus indicating involvement of unknown endogenous metal-homeostasis mechanisms. To determine these mechanisms, those metal-homeostasis genes that were expressed differently in transgenic and wild-type plants were identified by microarray and RT-qPCR analysis using laser-assisted microdissected RNA isolated from two root sectors: (epidermis + cortex and stele), and leaf sectors (upper epidermis + palisade parenchyma and lower epidermis + spongy parenchyma).

resultsZn-supply-dependent modification of Zn root/shoot distribution in AtHMA4-tomato (increase at 5 μM Zn, no change at 0.5 μM Zn) involved tissue-specific, distinct from that in the wild type, expression of tomato endogenous genes. First, it is suggested that an ethylene-dependent pathway underlies the detected changes in Zn root/shoot partitioning, as it was induced in transgenic plants in a distinct way depending on Zn exposure. Upon exposure to 5 or 0.5 μM Zn, in the epidermis + cortex of the transgenics' roots the expression of the Strategy I Fe-uptake system (ethylene-dependent LeIRT1 and LeFER) was respectively lower or higher than in the wild type and was accompanied by respectively lower or higher expression of the identified ethylene genes (LeNR, LeACO4, LeACO5) and of LeChln. Second, the contribution of LeNRAMP2 expression in the stele is shown to be distinct for wild-type and transgenic plants at both Zn exposures. Ethylene was also suggested as an important factor in a pathway induced in the leaves of transgenic plants by high Zn in the apoplast, which results in the initiation of loading of the excess Zn into the mesophyll of "Zn accumulating cells".

conclusionsIn transgenic tomato plants, the export activity of ectopically expressed AtHMA4 changes the cellular Zn status, which induces coordinated tissue-specific responses of endogenous ethylene-related genes and metal transporters. These changes constitute an important mechanism involved in the generation of the metal-related phenotype of transgenic tomato expressing AtHMA4.

Indexed as

Adenosine TriphosphatasesCadmiumCryoultramicrotomyFluoresceinsIronMicroscopy, ConfocalOligonucleotide Array Sequence AnalysisPlant RootsPlants, Genetically ModifiedPlant ShootsReal-Time Polymerase Chain ReactionRNA, PlantSolanum lycopersicumTranscriptomeZincAdenosine TriphosphatasesCadmiumFluoresceinsIronRNA, PlantZinczinpyr-1AtHMA4CadmiumLaser microdissectionMicroarrayTomatoZinc

Identifiers

PMID27519859
PMCPMC4982198
OpenAlexW2508326591

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.