Evidence map›Paper›PMID 27518435›Full record

ArticleCell death and differentiation2017

Coordinated ubiquitination and phosphorylation of RIP1 regulates necroptotic cell death.

M Cristina de Almagro, Tatiana Goncharov, Anita Izrael-Tomasevic, Stefanie Duttler, Matthias Kist, Eugene Varfolomeev, Xiumin Wu, Wyne P Lee, Jeremy Murray, Joshua D Webster and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Cell death and differentiation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 121 citations in OpenAlex.

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  9. A viral necrosome mediates direct RIPK3 activation to promote inflammatory necroptosis.Proceedings of the National Academy of Sciences of the United States of America · 2025
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13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 1 institution in 1 country.

M Cristina de AlmagroDepartment of Early Discovery Biochemistry, Genentech, 1 DNA Way, South San Francisco, CA 94080, USA.
Tatiana GoncharovDepartment of Early Discovery Biochemistry, Genentech, 1 DNA Way, South San Francisco, CA 94080, USA.
Anita Izrael-TomasevicDepartment of Protein Chemistry, Genentech, 1 DNA Way, South San Francisco, CA 94080, USA.
Stefanie DuttlerDepartment of Early Discovery Biochemistry, Genentech, 1 DNA Way, South San Francisco, CA 94080, USA.
Matthias KistDepartment of Early Discovery Biochemistry, Genentech, 1 DNA Way, South San Francisco, CA 94080, USA.
Eugene VarfolomeevDepartment of Early Discovery Biochemistry, Genentech, 1 DNA Way, South San Francisco, CA 94080, USA.
Xiumin WuDepartment of Translational Immunology, Genentech, 1 DNA Way, South San Francisco, CA 94080, USA.
Wyne P LeeDepartment of Translational Immunology, Genentech, 1 DNA Way, South San Francisco, CA 94080, USA.
Jeremy MurrayDepartment of Structural Biology, Genentech, 1 DNA Way, South San Francisco, CA 94080, USA.
Joshua D WebsterDepartment of Pathology, Genentech, 1 DNA Way, South San Francisco, CA 94080, USA.
Kebing YuDepartment of Protein Chemistry, Genentech, 1 DNA Way, South San Francisco, CA 94080, USA.
Donald S KirkpatrickDepartment of Protein Chemistry, Genentech, 1 DNA Way, South San Francisco, CA 94080, USA.
Kim NewtonDepartments of Physiological Chemistry, Genentech, 1 DNA Way, South San Francisco, CA 94080, USA.
Domagoj VucicDepartment of Early Discovery Biochemistry, Genentech, 1 DNA Way, South San Francisco, CA 94080, USA.
Department of Physiological Sciences · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proper regulation of cell death signaling is crucial for the maintenance of homeostasis and prevention of disease. A caspase-independent regulated form of cell death called necroptosis is rapidly emerging as an important mediator of a number of human pathologies including inflammatory bowel disease and ischemia-reperfusion organ injury. Activation of necroptotic signaling through TNF signaling or organ injury leads to the activation of kinases receptor-interacting protein kinases 1 and 3 (RIP1 and RIP3) and culminates in inflammatory cell death. We found that, in addition to phosphorylation, necroptotic cell death is regulated by ubiquitination of RIP1 in the necrosome. Necroptotic RIP1 ubiquitination requires RIP1 kinase activity, but not necroptotic mediators RIP3 and MLKL (mixed lineage kinase-like). Using immunoaffinity enrichment and mass spectrometry, we profiled numerous ubiquitination events on RIP1 that are triggered during necroptotic signaling. Mutation of a necroptosis-related ubiquitination site on RIP1 reduced necroptotic cell death and RIP1 ubiquitination and phosphorylation, and disrupted the assembly of RIP1 and RIP3 in the necrosome, suggesting that necroptotic RIP1 ubiquitination is important for maintaining RIP1 kinase activity in the necrosome complex. We also observed RIP1 ubiquitination in injured kidneys consistent with a physiological role of RIP1 ubiquitination in ischemia-reperfusion disease. Taken together, these data reveal that coordinated and interdependent RIP1 phosphorylation and ubiquitination within the necroptotic complex regulate necroptotic signaling and cell death.

Indexed as

ApoptosisAnimalsCell LineCreatinineCRISPR-Cas SystemsHEK293 CellsHT29 CellsHumansKidney DiseasesMiceNuclear Pore Complex ProteinsOligopeptidesPhosphorylationProtein KinasesProtein Structure, TertiaryReceptor-Interacting Protein Serine-Threonine KinasesAGFG1 protein, humanbenzyloxycarbonyl-valyl-alanyl-aspartic acidBV6 peptideCreatinineMLKL protein, humanNuclear Pore Complex ProteinsOligopeptidesProtein KinasesReceptor-Interacting Protein Serine-Threonine KinasesRIPK3 protein, humanRNA-Binding ProteinsTumor Necrosis Factor-alpha

Identifiers

PMID27518435
PMCPMC5260504
OpenAlexW2510282950

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.