Evidence map›Paper›PMID 27515574›Full record

ArticleProtein science : a publication of the Protein Society2016

Interaction between intrinsically disordered regions in transcription factors Sp1 and TAF4.

Emi Hibino, Rintaro Inoue, Masaaki Sugiyama, Jun Kuwahara, Katsumi Matsuzaki, Masaru Hoshino

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. What do Transcription Factors Interact With?Journal of molecular biology · 2021
    Review
  7. Article
  8. Article
  9. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Emi HibinoGraduate School of Pharmaceutical Sciences, Kyoto University, 46-29 Yoshida-Shimoadachi, Sakyo-Ku, Kyoto, 606-8501, Japan.
Rintaro InoueResearch Reactor Institute, Kyoto University, Kumatori, Sennan-Gun, Osaka, 590-0494, Japan.
Masaaki SugiyamaResearch Reactor Institute, Kyoto University, Kumatori, Sennan-Gun, Osaka, 590-0494, Japan.
Jun KuwaharaFaculty of Pharmaceutical Sciences, Doshisha Women's University, Kodo, Kyotanabe City, 610-0395, Japan.
Katsumi MatsuzakiGraduate School of Pharmaceutical Sciences, Kyoto University, 46-29 Yoshida-Shimoadachi, Sakyo-Ku, Kyoto, 606-8501, Japan.
Masaru HoshinoGraduate School of Pharmaceutical Sciences, Kyoto University, 46-29 Yoshida-Shimoadachi, Sakyo-Ku, Kyoto, 606-8501, Japan. hoshi@pharm.kyoto-u.ac.jp.
Kyoto University · JPDoshisha Women's College of Liberal Arts · JPKyoto University Research Reactor Institute · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The expression of eukaryotic genes is precisely controlled by specific interactions between general transcription initiation factors and gene-specific transcriptional activators. The general transcription factor TFIID, which plays an essential role in mediating transcriptional activation, is a multisubunit complex comprising the TATA box-binding protein (TBP) and multiple TBP-associated factors (TAFs). On the other hand, biochemical and genetic approaches have shown that the promoter-specific transcriptional activator Sp1 has the ability to interact with one of the components of TFIID, the TBP-associated factor TAF4. We herein report the structural details of the glutamine-rich domains (Q-domains) of Sp1 and TAF4 using circular dichroism (CD) and heteronuclear magnetic resonance (NMR) spectroscopy. We found that the two Q-domains of Sp1 and four Q-domains of TAF4 were disordered under physiological conditions. We also quantitatively analyzed the interaction between the Q-domains of Sp1 and TAF4 by NMR and surface plasmon resonance, and detected a weak but specific association between them. Nevertheless, a detailed analysis of CD spectra suggested that any significant conformational change did not occur concomitantly with this association, at least at the level of the overall secondary structure. These results may represent a prominent and exceptional binding mode for the IDPs, which are not categorized in a well-accepted concept of "coupled folding and binding."

Indexed as

Circular DichroismHumansNuclear Magnetic Resonance, BiomolecularProtein DomainsProtein Structure, SecondarySp1 Transcription FactorSurface Plasmon ResonanceTATA-Binding Protein Associated FactorsTranscription Factor TFIIDSP1 protein, humanSp1 Transcription FactorTAF4 protein, humanTATA-Binding Protein Associated FactorsTranscription Factor TFIIDglutamine-rich domainintrinsically disordered proteinmolecular interactionnuclear magnetic resonancetranscription factor

Identifiers

PMID27515574
PMCPMC5079245
OpenAlexW2512912801

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.