Evidence map›Paper›PMID 27515378›Full record

ArticleRetrovirology2016

Heterogeneous loss of HIV transcription and proviral DNA from 8E5/LAV lymphoblastic leukemia cells revealed by RNA FISH:FLOW analyses.

Kaley M Wilburn, Henry C Mwandumba, Kondwani C Jambo, Saikat Boliar, Sabrina Solouki, David G Russell, David W Gludish

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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  3. Review
  4. Article
  5. Article
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  7. Article
  8. Review
  9. Article
  10. Conditionally Replicating Vectors Mobilize Chimeric Antigen Receptors against HIV.Molecular therapy. Methods & clinical development · 2020
    Article
  11. Measuring the Success of HIV-1 Cure Strategies.Frontiers in cellular and infection microbiology · 2020
    Review
  12. Article
  13. Article
  14. Inhibition of the lncRNA SAF drives activation of apoptotic effector caspases in HIV-1-infected human macrophages.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 3 countries.

Kaley M WilburnDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA.
Henry C MwandumbaMalawi-Liverpool-Wellcome Trust Clinical Research Programme, University of Malawi College of Medicine, Blantyre, Malawi.
Kondwani C JamboDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA.
Saikat BoliarDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA.
Sabrina SoloukiDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA.
David G RussellDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA.
David W GludishDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA. dwg62@cornell.edu.ORCID 0000-0002-3537-4585
Cornell University · USUniversity of Liverpool · GB

Funding

How does HIV lead to increased susceptibility to tuberculosis?R01AI118582 · NIAID · CORNELL UNIVERSITY · PI RUSSELL, DAVID G · 2015 to 2019
$2.8M
Restoration of alveolar macrophage function in HIV patients: A clinical study.R01HL100928 · NHLBI · CORNELL UNIVERSITY · PI RUSSELL, DAVID G · 2010 to 2014
$2.4M
Do HIV-infected Alveolar Macrophages represent a cART-resistant Reservoir?R56AI122811 · NIAID · CORNELL UNIVERSITY · PI RUSSELL, DAVID G · 2016 to 2016
$462k
Veterinary Student Training in Biomedical ResearchT32OD011182 · OD · CORNELL UNIVERSITY · PI WAGNER, BETTINA · 2012 to 2013
$272k
NHLBI NIH HHS R01 HL100928NIAID NIH HHS R01 AI118582NIAID NIH HHS R56 AI122811NIH HHS T32 OD011182Wellcome Trust 088696/Z/09/Z
6 · The paper itself

Abstract

8E5/LAV cells harbor a single HIV provirus, and are used frequently to generate standards for HIV genome quantification. Using flow cytometry-based in situ mRNA hybridization validated by qPCR, we find that different batches of 8E5 cells contain varying numbers of cells lacking viral mRNA and/or viral genomes. These findings raise concerns for studies employing 8E5 cells for quantitation, and highlight the value of mRNA FISH and flow cytometry in the detection and enumeration of HIV-positive cells.

Indexed as

Transcription, GeneticCell Line, TumorDNA, ViralFlow CytometryGenome, ViralHIV-1HumansIn Situ Hybridization, FluorescencePrecursor Cell Lymphoblastic Leukemia-LymphomaProvirusesReal-Time Polymerase Chain ReactionRNA, ViralTranscription FactorsDNA, ViralRNA, ViralTranscription Factors8E5FISH:FACSFISH:FLOWHIV cell-associated RNAHIV flow cytometry assayHIV proviral lossHIV proviral silencingHIV RNA in situ hybridizationReservoir quantitation

Identifiers

PMID27515378
PMCPMC4982266
OpenAlexW2511597115

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.