Evidence map›Paper›PMID 27514367›Full record

ArticleBMC microbiology2016

PCR detection of Burkholderia multivorans in water and soil samples.

Charlotte Peeters, Stijn Daenekindt, Peter Vandamme

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Methodological tools to study species of the genus Burkholderia.Applied microbiology and biotechnology · 2021
    Review
  2. Article
  3. Clinical microbiology reviews · 2020
    Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Charlotte PeetersLaboratory of Microbiology, Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium.
Stijn DaenekindtDepartment of Sociology, Ghent University, Ghent, Belgium.
Peter VandammeLaboratory of Microbiology, Department of Biochemistry and Microbiology, Ghent University, Ghent, Belgium. Peter.Vandamme@UGent.be.ORCID 0000-0002-5581-7937
Ghent University · BEUniversity College Ghent · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAlthough semi-selective growth media have been developed for the isolation of Burkholderia cepacia complex bacteria from the environment, thus far Burkholderia multivorans has rarely been isolated from such samples. Because environmental B. multivorans isolates mainly originate from water samples, we hypothesized that water rather than soil is its most likely environmental niche. The aim of the present study was to assess the occurrence of B. multivorans in water samples from Flanders (Belgium) using a fast, culture-independent PCR assay.

resultsA nested PCR approach was used to achieve high sensitivity, and specificity was confirmed by sequencing the resulting amplicons. B. multivorans was detected in 11 % of the water samples (n = 112) and 92 % of the soil samples (n = 25) tested. The percentage of false positives was higher for water samples compared to soil samples, showing that the presently available B. multivorans recA primers lack specificity when applied to the analysis of water samples.

conclusionsThe results of the present study demonstrate that B. multivorans DNA is commonly present in soil samples and to a lesser extent in water samples in Flanders (Belgium).

Indexed as

BelgiumBurkholderiaDNA, BacterialDNA PrimersEnvironmental MicrobiologyHydrogen-Ion ConcentrationPolymerase Chain ReactionRec A RecombinasesRNA, Ribosomal, 16SSequence Analysis, DNASoilSoil MicrobiologyWaterWater MicrobiologyDNA, BacterialDNA PrimersRec A RecombinasesRNA, Ribosomal, 16SSoilWaterBurkholderia multivoransEnvironmental samplesPCR assayrecA

Identifiers

PMID27514367
PMCPMC4981952
OpenAlexW2516513948

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.