Evidence map›Paper›PMID 27514026›Full record

ArticleeLife2016

The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic.

Joel M Swenson, Serafin U Colmenares, Amy R Strom, Sylvain V Costes, Gary H Karpen

Open access · goldAbstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 74 citations in OpenAlex.

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  19. Theme and variation in the evolution of insect sex determination.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Joel M SwensonDivision of Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, United States.
Serafin U ColmenaresDivision of Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, United States.ORCID 0000-0002-4094-4220
Amy R StromDivision of Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, United States.
Sylvain V CostesDivision of Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, United States.
Gary H KarpenDivision of Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, United States.ORCID 0000-0003-1534-0385
Lawrence Berkeley National Laboratory · US

Funding

THE MOLECULAR BASIS OF CELL FUNCTIONT32GM007232 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BILDER, DAVID, UNAL, ELCIN · 1985 to 2022
$36.4M
New collections of dsRNAs and overexpression miRNA constructs to supplement RNAiR01GM067761 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI PERRIMON, NORBERT · 2003 to 2019
$15.5M
GENOMICST32HG000047 · NHGRI · UNIVERSITY OF CALIFORNIA BERKELEY · PI RASMUS NIELSEN, Daniel Soleyman Rokhsar · 2000 to 2026
$13.5M
Organization and Function of the Heterochromatin Holodomain and SubdomainsR01GM117420 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KARPEN, GARY H · 2016 to 2019
$2.5M
Regulation of DNA Damage and Repair in HeterochromatinR01GM086613 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KARPEN, GARY H · 2011 to 2014
$1.6M
Regulation of Gene Activity and Chromatin Structure in Drosophila HeterochromatinF32GM086111 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI COLMENARES, SERAFIN URO · 2008 to 2010
$149k
NHGRI NIH HHS T32 HG000047NIGMS NIH HHS F32 GM086111NIGMS NIH HHS R01 GM067761NIGMS NIH HHS R01 GM086613NIGMS NIH HHS R01 GM117420NIGMS NIH HHS T32 GM007232
6 · The paper itself

Abstract

Heterochromatin is enriched for specific epigenetic factors including Heterochromatin Protein 1a (HP1a), and is essential for many organismal functions. To elucidate heterochromatin organization and regulation, we purified Drosophila melanogaster HP1a interactors, and performed a genome-wide RNAi screen to identify genes that impact HP1a levels or localization. The majority of the over four hundred putative HP1a interactors and regulators identified were previously unknown. We found that 13 of 16 tested candidates (83%) are required for gene silencing, providing a substantial increase in the number of identified components that impact heterochromatin properties. Surprisingly, image analysis revealed that although some HP1a interactors and regulators are broadly distributed within the heterochromatin domain, most localize to discrete subdomains that display dynamic localization patterns during the cell cycle. We conclude that heterochromatin composition and architecture is more spatially complex and dynamic than previously suggested, and propose that a network of subdomains regulates diverse heterochromatin functions.

Indexed as

AnimalsChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneDrosophila melanogasterGene Expression RegulationHeterochromatinSpatio-Temporal AnalysisChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneHeterochromatincell biologychromosomesD. melanogastergenesgenome-wide RNAi screenheterochromatinnuclear organizationposition effect variegation

Identifiers

PMID27514026
PMCPMC4981497
OpenAlexW2509237256

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.