Evidence map›Paper›PMID 27513337›Full record

ArticlePloS one2016

The Dual NOD1/NOD2 Agonism of Muropeptides Containing a Meso-Diaminopimelic Acid Residue.

Yulia A Dagil, Nikolai P Arbatsky, Biana I Alkhazova, Vyacheslav L L'vov, Dmitriy V Mazurov, Mikhail V Pashenkov

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Article
  3. Structure-activity relationship in NOD2 agonistic muramyl dipeptides.European journal of medicinal chemistry · 2024
    Review
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  5. Review
  6. Review
  7. Peptidoglycan-Like Components in Z-100, Extracted fromJournal of immunology research · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Paraprobiotics and Postbiotics of ProbioticFrontiers in nutrition · 2020
    Review
  12. The Combinations Chitosan-PamInfection and immunity · 2019
    Article
  13. Review
  14. Article
  15. eLife · 2019
    Article
  16. Infection and immunity · 2019
    Article
  17. Review
  18. Review
  19. Interplay between Peptidoglycan Biology and Virulence in Gram-Negative Pathogens.Microbiology and molecular biology reviews : MMBR · 2018
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yulia A DagilLaboratory of Clinical Immunology, National Research Center "Institute of Immunology of the Federal Medical-Biological Agency", Moscow, Russia.
Nikolai P ArbatskyLaboratory of Clinical Immunology, National Research Center "Institute of Immunology of the Federal Medical-Biological Agency", Moscow, Russia.
Biana I AlkhazovaLaboratory of Preparative Biochemistry, National Research Center "Institute of Immunology of the Federal Medical-Biological Agency", Moscow, Russia.
Vyacheslav L L'vovLaboratory of Preparative Biochemistry, National Research Center "Institute of Immunology of the Federal Medical-Biological Agency", Moscow, Russia.
Dmitriy V MazurovLaboratory of Immunochemistry, National Research Center "Institute of Immunology of the Federal Medical-Biological Agency", Moscow, Russia.
Mikhail V PashenkovLaboratory of Clinical Immunology, National Research Center "Institute of Immunology of the Federal Medical-Biological Agency", Moscow, Russia.
Federal Medical-Biological Agency · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Muropeptides are fragments of peptidoglycan that trigger innate immune responses by activating nucleotide-binding oligomerization domain (NOD) 1 and NOD2. Muropeptides from Gram-negative bacteria contain a meso-diaminopimelic acid (meso-DAP) residue in either a terminal or a non-terminal position. While the former ones are known to be recognized by NOD1, much less is known about recognition of muropeptides with non-terminal meso-DAP, which are most abundant moieties of Gram-negative peptidoglycans. Here, we developed a novel system to assess biological activity of muropeptides, based on CRISPR/Cas9-mediated knockout (KO) of NOD1 and NOD2 genes in modified HEK293T cells. Using NOD1/NOD2 knockout and overexpression systems, as well as human monocytes and macrophages, we refine the current view of muropeptide recognition. We show that NOD2 can recognize different natural muropeptides containing a meso-DAP residue (preferably in a non-terminal position), provided they are present at micromolar concentrations. NOD2 accepts muropeptides with long and branched peptide chains and requires an intact N-acetylmuramyl residue. Muropeptides with non-terminal meso-DAP can activate NOD1 as well, but, in this case, probably require peptidase pre-processing to expose the meso-DAP residue. Depending on NOD1/NOD2 ratio in specific cell types, meso-DAP-containing muropeptides can be recognized either primarily via NOD2 (in monocytes) or via NOD1 (in monocyte-derived macrophages and HEK293T-derived cells). The dual NOD1/NOD2 agonism of meso-DAP-containing muropeptides should be taken into account when assessing cellular responses to muropeptides and designing muropeptide immunostimulants and vaccine adjuvants.

Indexed as

Adjuvants, ImmunologicCells, CulturedCytokinesDiaminopimelic AcidHEK293 CellsHumansImmunity, InnateMacrophagesMonocytesNod1 Signaling Adaptor ProteinNod2 Signaling Adaptor ProteinAdjuvants, ImmunologicCytokinesDiaminopimelic AcidNOD1 protein, humanNod1 Signaling Adaptor ProteinNOD2 protein, humanNod2 Signaling Adaptor Protein

Identifiers

PMID27513337
PMCPMC4981496
OpenAlexW2513100491

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.