Evidence map›Paper›PMID 27511275›Full record

ArticleScientific reports2016

Associations between microRNA binding site SNPs in FGFs and FGFRs and the risk of non-syndromic orofacial cleft.

Dandan Li, Hongchuang Zhang, Lan Ma, Yue Han, Min Xu, Zhendong Wang, Hongbing Jiang, Weibing Zhang, Lin Wang, Yongchu Pan

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. MicroRNAs and Gene Regulatory Networks Related to Cleft Lip and Palate.International journal of molecular sciences · 2023
    Review
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  5. Article
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  10. Review
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  16. Article
  17. MicroRNAs in Palatogenesis and Cleft Palate.Frontiers in physiology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Dandan LiInstitute of Stomatology, Nanjing Medical University, Nanjing, 210029, China.
Hongchuang ZhangXuzhou First People's Hospital, Xuzhou, 221000, China.
Lan MaInstitute of Stomatology, Nanjing Medical University, Nanjing, 210029, China.
Yue HanInstitute of Stomatology, Nanjing Medical University, Nanjing, 210029, China.
Min XuInstitute of Stomatology, Nanjing Medical University, Nanjing, 210029, China.
Zhendong WangInstitute of Stomatology, Nanjing Medical University, Nanjing, 210029, China.
Hongbing JiangInstitute of Stomatology, Nanjing Medical University, Nanjing, 210029, China.
Weibing ZhangInstitute of Stomatology, Nanjing Medical University, Nanjing, 210029, China.
Lin WangInstitute of Stomatology, Nanjing Medical University, Nanjing, 210029, China.
Yongchu PanInstitute of Stomatology, Nanjing Medical University, Nanjing, 210029, China.
Nanjing Medical University · CNXuzhou No.1 People's Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We hypothesized that microRNA binding site single nucleotide polymorphisms (SNPs) in fibroblast growth factors (FGFs) and their receptor genes (FGFRs) may affect microRNA and mRNA interactions and are thereby associated with susceptibility of non-syndromic orofacial cleft (NSOC). Ten SNPs among the FGF and FGFR genes were selected and their associations with NSOC susceptibility were investigated in a case-control study of 602 patients with NSOC and 605 healthy controls. FGF2/rs1048201, FGF5/rs3733336 and FGF9/rs546782 showed suggestive association with NSOC susceptibility. In the combination analysis, the observed odds ratios (ORs) decreased with the number of protective alleles (rs1048201-T, rs3733336-G and rs546782-T) but were not statistically significant beyond the first comparison. Hsa-miRNA-496, hsa-miRNA-145 and hsa-miRNA-187 were predicted to be miRNAs with binding sites within/near these SNPs and were expressed in lip tissues. Decreased FGF2, FGF5 and FGF9 expression was observed in three cell lines transfected with the corresponding miRNAs. Moreover, the three SNPs could contribute to differential binding efficacy between hsa-miRNA-496 and FGF2, hsa-miRNA-145 and FGF5, hsa-miRNA-187 and FGF9 in luciferase assay. The results suggest that FGF2/rs1048201, FGF5/rs3733336 and FGF9/rs546782 are associated with the risk of NSOC and that these miRNA-FGF interactions may affect NSOC development.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideBinding SitesBrainCase-Control StudiesCleft LipCleft PalateFibroblast Growth Factor 2Fibroblast Growth Factor 5Fibroblast Growth Factor 9HumansMicroRNAsRisk AssessmentFGF5 protein, humanFGF9 protein, humanFibroblast Growth Factor 2Fibroblast Growth Factor 5Fibroblast Growth Factor 9MicroRNAs

Identifiers

PMID27511275
PMCPMC4980626
OpenAlexW2508023007

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.