Evidence map›Paper›PMID 27510903›Full record

ArticleScience translational medicine2016

Loss-of-function mutations in the RNA biogenesis factor NAF1 predispose to pulmonary fibrosis-emphysema.

Susan E Stanley, Dustin L Gable, Christa L Wagner, Thomas M Carlile, Vidya Sagar Hanumanthu, Joshua D Podlevsky, Sara E Khalil, Amy E DeZern, Maria F Rojas-Duran, Carolyn D Applegate and 4 more

Open access · greenAbstract read
In one paragraph

Article in Science translational medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 128 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
128citing papers in PubMed, 3 pooled it
13.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

128 citing papers in PubMed, 3 syntheses or guidelines pooled it, 203 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Guideline
  4. Telomere Length and Use of Immunosuppressive Medications in Idiopathic Pulmonary Fibrosis.American journal of respiratory and critical care medicine · 2019
    Trial
  5. Review
  6. Review
  7. Article
  8. Review
  9. Clonal Signatures of Telomere Biology Disorders.Current hematologic malignancy reports · 2026
    Review
  10. Efficient CRISPR-Cas RNP-based gene targeting of human AT2 cells.American journal of respiratory cell and molecular biology · 2026
    Article
  11. Review
  12. Genetic Familial Interstitial Lung Disease.Clinics in chest medicine · 2025
    Review
  13. Article
  14. Article
  15. Mendelian causes of early-onset emphysema: a review of the current literature.European respiratory review : an official journal of the European Respiratory Society · 2025
    Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Review

68 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Susan E StanleyDepartment of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA. Medical Scientist Training Program, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.
Dustin L GableDepartment of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA. Medical Scientist Training Program, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.
Christa L WagnerDepartment of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.
Thomas M CarlileDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Vidya Sagar HanumanthuDepartment of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.
Joshua D PodlevskyDepartment of Chemistry and Biochemistry, Arizona State University, Tempe, AZ 85277, USA.
Sara E KhalilDepartment of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.
Amy E DeZernDepartment of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA. Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA. Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.
Maria F Rojas-DuranDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Carolyn D ApplegateDepartment of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA. Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA. McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.
Jonathan K AlderDepartment of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.
Erin M ParryDepartment of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA. Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.
Wendy V GilbertDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Mary ArmaniosDepartment of Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA. Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA. McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA. marmani1@jhmi.edu.
Johns Hopkins Medicine · USJohns Hopkins University · USMassachusetts Institute of Technology · USSidney Kimmel Comprehensive Cancer Center · US

Funding

Translational Research Central ServicesP30CA006973 · NCI · JOHNS HOPKINS UNIVERSITY · PI Rosalie Wollett · 1985 to 2026
$208.6M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007309 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI COX, ANDREA L · 1985 to 2019
$43.2M
Training Program in Cellular and Molecular MedicineT32GM008752 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI RAO, RAJINI · 2000 to 2019
$11.7M
Predoctoral Training Program in Human GeneticsT32GM007814 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 1985 to 2021
$10.6M
Mechanisms of Telomere-Induced EmphysemaR01HL119476 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI ARMANIOS, MARY Y · 2014 to 2023
$4.5M
Regulation and Function of snoRNA GenesR01GM101316 · NIGMS · YALE UNIVERSITY · PI Wendy Victoria Gilbert · 2014 to 2026
$3.9M
The Role of Telomere Shortening in MDS-AML Pathogenesis (resubmission)R01CA160433 · NCI · JOHNS HOPKINS UNIVERSITY · PI ARMANIOS, MARY Y · 2012 to 2016
$1.7M
Mechanisms of Teleomere-Mediated EmphysemaR00HL113105 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ALDER, JONATHAN K. · 2014 to 2016
$743k
Characterizing functional targets of a non-coding RNA oncogene, SNORA42R21CA187236 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GILBERT, WENDY VICTORIA · 2015 to 2016
$361k
NCI NIH HHS P30 CA006973NCI NIH HHS R01 CA160433NCI NIH HHS R21 CA187236NHLBI NIH HHS R00 HL113105NHLBI NIH HHS R01 HL119476NIGMS NIH HHS R01 GM101316NIGMS NIH HHS T32 GM007309NIGMS NIH HHS T32 GM007814NIGMS NIH HHS T32 GM008752
6 · The paper itself

Abstract

Chronic obstructive pulmonary disease and pulmonary fibrosis have been hypothesized to represent premature aging phenotypes. At times, they cluster in families, but the genetic basis is not understood. We identified rare, frameshift mutations in the gene for nuclear assembly factor 1, NAF1, a box H/ACA RNA biogenesis factor, in pulmonary fibrosis-emphysema patients. The mutations segregated with short telomere length, low telomerase RNA levels, and extrapulmonary manifestations including myelodysplastic syndrome and liver disease. A truncated NAF1 was detected in cells derived from patients, and, in cells in which the frameshift mutation was introduced by genome editing, telomerase RNA levels were reduced. The mutant NAF1 lacked a conserved carboxyl-terminal motif, which we show is required for nuclear localization. To understand the disease mechanism, we used CRISPR (clustered regularly interspaced short palindromic repeats)/Cas9 (CRISPR-associated protein-9 nuclease) to generate Naf1(+/-) mice and found that they had half the levels of telomerase RNA. Other box H/ACA RNA levels were also decreased, but rRNA pseudouridylation, which is guided by snoRNAs, was intact. Moreover, first-generation Naf1(+/-) mice showed no evidence of ribosomal pathology. Our data indicate that disease in NAF1 mutation carriers is telomere-mediated; they show that NAF1 haploinsufficiency selectively disturbs telomere length homeostasis by decreasing the levels of telomerase RNA while sparing rRNA pseudouridylation.

Indexed as

AnimalsAutophagy-Related ProteinsCarrier ProteinsEmphysemaGenetic Predisposition to DiseaseHigh-Throughput Nucleotide SequencingHumansImmunoblottingMiceMice, Inbred C57BLMice, KnockoutMutationNerve Tissue ProteinsPulmonary FibrosisRibonucleoproteinsRNAAutophagy-Related ProteinsCarrier ProteinsNAF1 protein, humanNerve Tissue ProteinsNoxp70 protein, mouseRibonucleoproteinsRNATelomerasetelomerase RNA

Identifiers

PMID27510903
PMCPMC5351811
OpenAlexW2487349788

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.