Evidence map›Paper›PMID 27510891›Full record

ArticleG3 (Bethesda, Md.)2016

A New Advanced Backcross Tomato Population Enables High Resolution Leaf QTL Mapping and Gene Identification.

Daniel Fulop, Aashish Ranjan, Itai Ofner, Michael F Covington, Daniel H Chitwood, Donelly West, Yasunori Ichihashi, Lauren Headland, Daniel Zamir, Julin N Maloof and 1 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. A novel tomato interspecific (Horticulture research · 2024
    Article
  3. Article
  4. Article
  5. Gossypium mustelinum genome and an introgression population enrich interspecific genetics and breeding in cotton.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  6. Review
  7. Article
  8. Leaf shape inEcology and evolution · 2020
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Phenotypic and Molecular Selection of a SuperiorFrontiers in plant science · 2019
    Article
  14. Article
  15. Mutations inProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Daniel FulopDepartment of Plant Biology, University of California at Davis, California 95616.ORCID 0000-0002-3778-4107
Aashish RanjanDepartment of Plant Biology, University of California at Davis, California 95616.ORCID 0000-0003-3447-4442
Itai OfnerInstitute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel.
Michael F CovingtonDepartment of Plant Biology, University of California at Davis, California 95616.ORCID 0000-0002-0555-6409
Daniel H ChitwoodDepartment of Plant Biology, University of California at Davis, California 95616.ORCID 0000-0003-4875-1447
Donelly WestDepartment of Plant Biology, University of California at Davis, California 95616.ORCID 0000-0003-0624-8034
Yasunori IchihashiDepartment of Plant Biology, University of California at Davis, California 95616.ORCID 0000-0003-1935-4397
Lauren HeadlandDepartment of Plant Biology, University of California at Davis, California 95616.
Daniel ZamirInstitute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel.
Julin N MaloofDepartment of Plant Biology, University of California at Davis, California 95616 nrsinha@ucdavis.edu jnmaloof@ucdavis.edu.ORCID 0000-0002-9623-2599
Neelima R SinhaDepartment of Plant Biology, University of California at Davis, California 95616 nrsinha@ucdavis.edu jnmaloof@ucdavis.edu.ORCID 0000-0002-1494-7065
Hebrew University of Jerusalem · IL

Funding

Genome Sequencer FLXS10RR029668 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI NGAI, JOHN J. · 2010 to 2010
$623k
Illumina Sequencer to Facilitate Functional Genomics at BerkeleyS10RR027303 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI TAYLOR, JOHN W. · 2010 to 2010
$500k
NCRR NIH HHS S10 RR027303NCRR NIH HHS S10 RR029668
6 · The paper itself

Abstract

Quantitative Trait Loci (QTL) mapping is a powerful technique for dissecting the genetic basis of traits and species differences. Established tomato mapping populations between domesticated tomato (Solanum lycopersicum) and its more distant interfertile relatives typically follow a near isogenic line (NIL) design, such as the S. pennellii Introgression Line (IL) population, with a single wild introgression per line in an otherwise domesticated genetic background. Here, we report on a new advanced backcross QTL mapping resource for tomato, derived from a cross between the M82 tomato cultivar and S. pennellii This so-called Backcrossed Inbred Line (BIL) population is comprised of a mix of BC

Indexed as

Chromosome MappingCrosses, GeneticGenes, PlantGenetic Association StudiesQuantitative Trait LociEpistasis, GeneticGenotypeInbreedingMarkov ChainsModels, GeneticPhenotypePlant LeavesPolymorphism, GeneticQuantitative Trait, HeritableSolanum lycopersicumepistatic QTLfine-mapping QTLheterogeneous Hidden Markov Modelregularized regressionvariable selection

Identifiers

PMID27510891
PMCPMC5068939
OpenAlexW2953076282

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.