Evidence map›Paper›PMID 27508941›Full record

ArticleProtein science : a publication of the Protein Society2016

Intrinsic protein disorder could be overlooked in cocrystallization conditions: An SRCD case study.

Eszter Németh, Ria K Balogh, Katalin Borsos, Anikó Czene, Peter W Thulstrup, Béla Gyurcsik

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Eszter NémethDepartment of Inorganic and Analytical Chemistry, University of Szeged, Szeged, 6720, Hungary.
Ria K BaloghDepartment of Inorganic and Analytical Chemistry, University of Szeged, Szeged, 6720, Hungary.
Katalin BorsosDepartment of Inorganic and Analytical Chemistry, University of Szeged, Szeged, 6720, Hungary.
Anikó CzeneMTA-SZTE, Bioinorganic Chemistry Research Group, Hungarian Academy of Sciences, Szeged, 6720, Hungary.
Peter W ThulstrupDepartment of Chemistry, University of Copenhagen, Copenhagen, 2100, Denmark.
Béla GyurcsikDepartment of Inorganic and Analytical Chemistry, University of Szeged, Szeged, 6720, Hungary. gyurcsik@chem.u-szeged.hu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

X-ray diffractometry dominates protein studies, as it can provide 3D structures of these diverse macromolecules or their molecular complexes with interacting partners: substrates, inhibitors, and/or cofactors. Here, we show that under cocrystallization conditions the results could reflect induced protein folds instead of the (partially) disordered original structures. The analysis of synchrotron radiation circular dichroism spectra revealed that the Im7 immunity protein stabilizes the native-like solution structure of unfolded NColE7 nuclease mutants via complex formation. This is consistent with the fact that among the several available crystal structures with its inhibitor or substrate, all NColE7 structures are virtually the same. Our results draw attention to the possible structural consequence of protein modifications, which is often hidden by compensational effects of intermolecular interactions. The growing evidence on the importance of protein intrinsic disorder thus, demands more extensive complementary experiments in solution phase with the unligated form of the protein of interest.

Indexed as

MutationProtein FoldingCrystallography, X-RayDeoxyribonucleasesDeoxyribonucleasescolicin E7 nucleaseIm7 immunity proteininduced protein foldingSRCD spectroscopy

Identifiers

PMID27508941
PMCPMC5079248

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.