Evidence map›Paper›PMID 27508417›Full record

ArticlePloS one2016

The 4p16.3 Parkinson Disease Risk Locus Is Associated with GAK Expression and Genes Involved with the Synaptic Vesicle Membrane.

Michael W Nagle, Jeanne C Latourelle, Adam Labadorf, Alexandra Dumitriu, Tiffany C Hadzi, Thomas G Beach, Richard H Myers

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Shared genetic architecture between DTI-ALPS traits and neurodegenerative diseases.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
    Article
  3. Article
  4. Review
  5. Review
  6. Genetic mutations in kinases: a comprehensive review on marketed inhibitors and unexplored targets in Parkinson's disease.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2025
    Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Association ofFrontiers in genetics · 2021
    Article
  12. Article
  13. Membrane trafficking in health and disease.Disease models & mechanisms · 2020
    Review
  14. Review
  15. Review
  16. Genetic risk factors in Parkinson's disease.Cell and tissue research · 2018
    Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Michael W NagleDepartment of Neurology, Boston University School of Medicine, Boston, MA, 02118, United States of America.
Jeanne C LatourelleDepartment of Neurology, Boston University School of Medicine, Boston, MA, 02118, United States of America.
Adam LabadorfDepartment of Neurology, Boston University School of Medicine, Boston, MA, 02118, United States of America.
Alexandra DumitriuDepartment of Neurology, Boston University School of Medicine, Boston, MA, 02118, United States of America.
Tiffany C HadziDepartment of Neurology, Boston University School of Medicine, Boston, MA, 02118, United States of America.
Thomas G BeachBanner Sun Health Research Institute, Sun City, Arizona, 85351, United States of America.
Richard H MyersDepartment of Neurology, Boston University School of Medicine, Boston, MA, 02118, United States of America.
Boston University · USBanner Sun Health Research Institute · US

Funding

National Brain and Tissue Resource for Parkinson's Disease and Related DisordersU24NS072026 · NINDS · BANNER SUN HEALTH RESEARCH INSTITUTE · PI BEACH, THOMAS G · 2011 to 2015
$7.8M
Characterization of the role of cyclin G-associated kinase in Parkinson diseaseR01NS076843 · NINDS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI MYERS, RICHARD H · 2011 to 2013
$1.4M
NINDS NIH HHS R01 NS076843NINDS NIH HHS U24 NS072026
6 · The paper itself

Abstract

Genome-wide association studies (GWAS) have identified the GAK/DGKQ/IDUA region on 4p16.3 among the top three risk loci for Parkinson's disease (PD), but the specific gene and risk mechanism are unclear. Here, we report transcripts containing the 3' clathrin-binding domain of GAK identified by RNA deep-sequencing in post-mortem human brain tissue as having increased expression in PD. Furthermore, carriers of 4p16.3 PD GWAS risk SNPs show decreased expression of one of these transcripts, GAK25 (Gencode Transcript 009), which correlates with the expression of genes functioning in the synaptic vesicle membrane. Together, these findings provide strong evidence for GAK clathrin-binding- and J-domain transcripts' influence on PD pathogenicity, and for a role for GAK in regulating synaptic function in PD.

Indexed as

Chromosomes, Human, Pair 4Polymorphism, Single NucleotideBrainExonsGene ExpressionGenome-Wide Association StudyHumansIntracellular Signaling Peptides and ProteinsMitochondriaParkinson DiseaseProtein Serine-Threonine KinasesSynaptic VesiclesGAK protein, humanIntracellular Signaling Peptides and ProteinsProtein Serine-Threonine Kinases

Identifiers

PMID27508417
PMCPMC4980018
OpenAlexW2506387322

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.