Evidence map›Paper›PMID 27507791›Full record

ArticleG3 (Bethesda, Md.)2016

Glucose or Altered Ceramide Biosynthesis Mediate Oxygen Deprivation Sensitivity Through Novel Pathways Revealed by Transcriptome Analysis in Caenorhabditis elegans.

Mary L Ladage, Skylar D King, David J Burks, Daniel L Quan, Anastacia M Garcia, Rajeev K Azad, Pamela A Padilla

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  3. Article
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  5. Marine drugs · 2021
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  6. Phenolic Compounds Reduce the Fat Content inPharmaceuticals (Basel, Switzerland) · 2020
    Article
  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Mary L LadageDepartment of Biological Sciences, University of North Texas, Denton, Texas 76203.
Skylar D KingDepartment of Biological Sciences, University of North Texas, Denton, Texas 76203.
David J BurksDepartment of Biological Sciences, University of North Texas, Denton, Texas 76203.
Daniel L QuanDepartment of Biological Sciences, University of North Texas, Denton, Texas 76203.
Anastacia M GarciaDepartment of Biological Sciences, University of North Texas, Denton, Texas 76203.
Rajeev K AzadDepartment of Biological Sciences, University of North Texas, Denton, Texas 76203 Department of Mathematics, University of North Texas, Denton, Texas 76203.
Pamela A PadillaDepartment of Biological Sciences, University of North Texas, Denton, Texas 76203 pamela.padilla@unt.edu.
University of North Texas · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Molecular consequences of glucose diet and altered ceramide species impacting oxygen deprivation responsesR15DK109524 · NIDDK · UNIVERSITY OF NORTH TEXAS · PI AZAD, RAJEEV K., PADILLA, PAMELA ANNE · 2016 to 2016
$445k
NIDDK NIH HHS R15 DK109524NIH HHS P40 OD010440
6 · The paper itself

Abstract

Individuals with type 2 diabetes display metabolic abnormalities, such as hyperglycemia, increased free fatty acids, insulin resistance, and altered ceramide levels, that contribute to vascular dysfunctions and compromised oxygen delivery. Caenorhabditis elegans fed a glucose-supplemented diet or with altered ceramide metabolism, due to a hyl-2 mutation, are sensitive to oxygen deprivation (anoxia). Our experiments showed that the combination of these factors further decreased the anoxia survival. RNA-sequencing analysis was performed to assess how a glucose-supplemented diet and/or a hyl-2 mutation altered the transcriptome. Comparison analysis of transcripts associated with anoxia-sensitive animals [hyl-2(tm2031) mutation or a glucose diet] revealed 199 common transcripts encoded by genes with known or predicted functions involving innate immunity, cuticle function (collagens), or xenobiotic and endobiotic phase I and II detoxification system. Use of RNA interference (RNAi) to target gene products of the xenobiotic and endobiotic phase I and II detoxification system (UDP-glycosyltransferase and Cytochrome p450 genes; ugt-15, ugt-18, ugt-19, ugt-41, ugt-63, cyp-13A12, cyp-25A1, and cyp-33C8) increased anoxia survival in wild-type animals fed a standard diet. Anoxia sensitivity of the hyl-2(tm2031) animals was suppressed by RNAi of cyp-25A1 or cyp-33C8 genes. A glucose diet fed to the P0 hermaphrodite decreased the anoxia survival of its F1 embryos; however, the RNAi of ugt-63 and cyp-33C8 suppressed anoxia sensitivity. These studies provide evidence that the detoxification system impacts oxygen deprivation responses and that C. elegans can be used to model the conserved detoxification system.

Indexed as

Gene Expression ProfilingSignal TransductionTranscriptomeAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCeramidesCluster AnalysisComputational BiologyGene Knockdown TechniquesGlucoseHypoxiaLipid MetabolismMaleMetabolic Detoxication, Phase IMetabolic Detoxication, Phase IICaenorhabditis elegans ProteinsCeramidesGlucoseOxygenXenobioticscollagenglucose toxicityinnate immunitylipid biosynthesisxenobiotic and endobiotic detoxification

Identifiers

PMID27507791
PMCPMC5068937
OpenAlexW2517274982

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.