Evidence map›Paper›PMID 27506615›Full record

ArticleScientific reports2016

Transcriptomic evidence for modulation of host inflammatory responses during febrile Plasmodium falciparum malaria.

Tuan M Tran, Marcus B Jones, Aissata Ongoiba, Else M Bijker, Remko Schats, Pratap Venepally, Jeff Skinner, Safiatou Doumbo, Edwin Quinten, Leo G Visser and 14 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed, 2 pooled it
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 2 syntheses or guidelines pooled it, 119 citations in OpenAlex.

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5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 8 institutions in 4 countries.

Tuan M TranLaboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD, USA.
Marcus B JonesGenomic Medicine Group, J. Craig Venter Institute, Rockville, Maryland, USA.
Aissata OngoibaMali International Center of Excellence in Research, University of Sciences, Technique and Technology of Bamako, Bamako, Mali.
Else M BijkerDepartment of Medical Microbiology, Radboud University Medical Center, Nijmegen, The Netherlands.
Remko SchatsDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands.
Pratap VenepallyGenomic Medicine Group, J. Craig Venter Institute, Rockville, Maryland, USA.
Jeff SkinnerLaboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD, USA.
Safiatou DoumboMali International Center of Excellence in Research, University of Sciences, Technique and Technology of Bamako, Bamako, Mali.
Edwin QuintenDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands.
Leo G VisserDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands.
Elizabeth WhalenSystems Immunology Division, Benaroya Research Institute, Seattle, WA, USA.
Scott PresnellSystems Immunology Division, Benaroya Research Institute, Seattle, WA, USA.
Elise M O'ConnellLaboratory of Parasitic Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Kassoum KayentaoMali International Center of Excellence in Research, University of Sciences, Technique and Technology of Bamako, Bamako, Mali.
Ogobara K DoumboMali International Center of Excellence in Research, University of Sciences, Technique and Technology of Bamako, Bamako, Mali.
Damien ChaussabelSystems Immunology Division, Benaroya Research Institute, Seattle, WA, USA.
Hernan LorenziInfectious Diseases Group, J. Craig Venter Institute, Bethesda, Maryland, USA.
Thomas B NutmanLaboratory of Parasitic Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.
Tom H M OttenhoffDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands.
Mariëlle C HaksDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands.
Boubacar TraoreMali International Center of Excellence in Research, University of Sciences, Technique and Technology of Bamako, Bamako, Mali.
Ewen F KirknessGenomic Medicine Group, J. Craig Venter Institute, Rockville, Maryland, USA.
Robert W SauerweinDepartment of Medical Microbiology, Radboud University Medical Center, Nijmegen, The Netherlands.
Peter D CromptonLaboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD, USA.
Leiden University Medical Center · NLUniversité des Sciences, des Techniques et des Technologies de Bamako · MLJ. Craig Venter Institute · USBenaroya Research InstituteNational Institute of Allergy and Infectious Diseases · USRadboud University Medical Center · NLIndiana University – Purdue University Indianapolis · USNational Institutes of Health · US

Funding

Mechanisms of naturally-acquired immunity to malaria and clinical trials of anti-malaria monoclonal antibodiesZIAAI001155 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI CROMPTON, PETER · 2011 to 2025
$30.9M
The J. Craig Venter Institute Genome Center for Infectious DiseasesU19AI110819 · NIAID · J. CRAIG VENTER INSTITUTE, INC. · PI TAN, GENE · 2014 to 2018
$29.7M
Molecular Definition Of Filarial And Related Nonfilarial Genes And ProteinsZIAAI000512 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI NUTMAN, THOMAS · 2009 to 2025
$9.9M
NIAID NIH HHS HHSN272200900007CNIAID NIH HHS U19 AI110819
6 · The paper itself

Abstract

Identifying molecular predictors and mechanisms of malaria disease is important for understanding how Plasmodium falciparum malaria is controlled. Transcriptomic studies in humans have so far been limited to retrospective analysis of blood samples from clinical cases. In this prospective, proof-of-principle study, we compared whole-blood RNA-seq profiles at pre-and post-infection time points from Malian adults who were either asymptomatic (n = 5) or febrile (n = 3) during their first seasonal PCR-positive P. falciparum infection with those from malaria-naïve Dutch adults after a single controlled human malaria infection (n = 5). Our data show a graded activation of pathways downstream of pro-inflammatory cytokines, with the highest activation in malaria-naïve Dutch individuals and significantly reduced activation in malaria-experienced Malians. Newly febrile and asymptomatic infections in Malians were statistically indistinguishable except for genes activated by pro-inflammatory cytokines. The combined data provide a molecular basis for the development of a pyrogenic threshold as individuals acquire immunity to clinical malaria.

Indexed as

TranscriptomeAdolescentCytokinesFemaleGene Expression ProfilingHumansInflammationMalaria, FalciparumMaleMaliNetherlandsPlasmodium falciparumPolymerase Chain ReactionProof of Concept StudyProspective StudiesSequence Analysis, RNACytokines

Identifiers

PMID27506615
PMCPMC4978957
OpenAlexW2476632933

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.