Evidence map›Paper›PMID 27506391›Full record

ArticleBMC infectious diseases2016

Molecular epidemiology of Mycobacterium africanum in Ghana.

Adwoa Asante-Poku, Isaac Darko Otchere, Stephen Osei-Wusu, Esther Sarpong, Akosua Baddoo, Audrey Forson, Clement Laryea, Sonia Borrell, Frank Bonsu, Jan Hattendorf and 4 more

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 50 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Insight into the genetic diversity ofMicrobiology spectrum · 2026
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  9. Identification of positively selected genes inFrontiers in microbiology · 2024
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  10. Review
  11. Macrophage susceptibility to infection by GhanaianFrontiers in cellular and infection microbiology · 2023
    Article
  12. Article
  13. Article
  14. Understanding the Genetic Diversity ofFrontiers in genetics · 2022
    Article
  15. Article
  16. Phylogenomics ofMicrobial genomics · 2021
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Adwoa Asante-PokuNoguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana.
Isaac Darko OtchereNoguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana.
Stephen Osei-WusuNoguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana.
Esther SarpongNoguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana.
Akosua BaddooDepartment of Chest Diseases, Korle-Bu Teaching Hospital, Korle-bu, Accra, Ghana.
Audrey ForsonDepartment of Chest Diseases, Korle-Bu Teaching Hospital, Korle-bu, Accra, Ghana.
Clement Laryea37 Military Hospital, Accra, Ghana.
Sonia BorrellDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland.
Frank BonsuNational Tuberculosis Programme, Ghana health Service, Accra, Ghana.
Jan HattendorfUniversity of Basel, Basel, Switzerland.
Collins AhorluNoguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana.
Kwadwo A KoramNoguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana.
Sebastien GagneuxDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Basel, Switzerland.
Dorothy Yeboah-ManuNoguchi Memorial Institute for Medical Research, University of Ghana, Legon, Ghana. Dyeboah-Manu@noguchi.ug.edu.gh.ORCID 0000-0002-1663-6287
University of Ghana · GHSwiss Tropical and Public Health Institute · CHKorle Bu Teaching Hospital · GH37 Military Hospital · GHGhana Health Service · GH

Funding

Wellcome Trust 097134
6 · The paper itself

Abstract

backgroundMycobacterium africanum comprises two phylogenetic lineages within the M. tuberculosis complex (MTBC) and is an important cause of human tuberculosis (TB) in West Africa. The reasons for this geographic restriction of M. africanum remain unclear. Here, we performed a prospective study to explore associations between the characteristics of TB patients and the MTBC lineages circulating in Ghana.

methodWe genotyped 1,211 MTBC isolates recovered from pulmonary TB patients recruited between 2012 and 2014 using single nucleotide polymorphism typing and spoligotyping. Associations between patient and pathogen variables were assessed using univariate and multivariate logistic regression.

resultsOf the 1,211 MTBC isolates analysed, 71.9 % (871) belonged to Lineage 4; 12.6 % (152) to Lineage 5 (also known as M. africanum West-Africa 1), 9.2 % (112) to Lineage 6 (also known as M. africanum West-Africa 2) and 0.6 % (7) to Mycobacterium bovis. Univariate analysis revealed that Lineage 6 strains were less likely to be isoniazid resistant compared to other strains (odds ratio = 0.25, 95 % confidence interval (CI): 0.05-0.77, P < 0.01). Multivariate analysis showed that Lineage 5 was significantly more common in patients from the Ewe ethnic group (adjusted odds ratio (adjOR): 2.79; 95 % CI: 1.47-5.29, P < 0.001) and Lineage 6 more likely to be found among HIV-co-infected TB patients (adjOR = 2.2; 95 % confidence interval (CI: 1.32-3.7, P < 0.001).

conclusionOur findings confirm the importance of M. africanum in Ghana and highlight the need to differentiate between Lineage 5 and Lineage 6, as these lineages differ in associated patient variables.

Indexed as

AdolescentAdultAgedAged, 80 and overAIDS-Related Opportunistic InfectionsChildChild, PreschoolDrug Resistance, BacterialFemaleGhanaHIV InfectionsHumansMaleMicrobial Sensitivity TestsMolecular EpidemiologyMycobacterium

Identifiers

PMID27506391
PMCPMC4977717
OpenAlexW2515979788

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.