Evidence map›Paper›PMID 27506208›Full record

ArticleJournal of the American Society for Mass Spectrometry2017

Action-FRET of a Gaseous Protein.

Steven Daly, Geoffrey Knight, Mohamed Abdul Halim, Alexander Kulesza, Chang Min Choi, Fabien Chirot, Luke MacAleese, Rodolphe Antoine, Philippe Dugourd

Abstract read
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Analytical applications of gas-phase ion chemistry enabled by mass spectrometry.Analytical methods : advancing methods and applications · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Combining Structural Probes in the Gas Phase - Ion Mobility-Resolved Action-FRET.Journal of the American Society for Mass Spectrometry · 2018
    Article
  7. Visible Multiphoton Dissociation of Chromophore-Tagged Peptides.Journal of the American Society for Mass Spectrometry · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Steven DalyInstitut Lumière Matière, Université Lyon 1-CNRS, Université de Lyon, 69622, Villeurbanne cedex, France.
Geoffrey KnightInstitut Lumière Matière, Université Lyon 1-CNRS, Université de Lyon, 69622, Villeurbanne cedex, France.
Mohamed Abdul HalimInstitut Lumière Matière, Université Lyon 1-CNRS, Université de Lyon, 69622, Villeurbanne cedex, France.
Alexander KuleszaInstitut Lumière Matière, Université Lyon 1-CNRS, Université de Lyon, 69622, Villeurbanne cedex, France.
Chang Min ChoiInstitut Lumière Matière, Université Lyon 1-CNRS, Université de Lyon, 69622, Villeurbanne cedex, France.
Fabien ChirotInstitut des Sciences Analytiques, Université Lyon 1 - CNRS, Université de Lyon, 69622, Villeurbanne Cedex, France.
Luke MacAleeseInstitut Lumière Matière, Université Lyon 1-CNRS, Université de Lyon, 69622, Villeurbanne cedex, France.
Rodolphe AntoineInstitut Lumière Matière, Université Lyon 1-CNRS, Université de Lyon, 69622, Villeurbanne cedex, France.
Philippe DugourdInstitut Lumière Matière, Université Lyon 1-CNRS, Université de Lyon, 69622, Villeurbanne cedex, France. philippe.dugourd@univ-lyon1.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mass spectrometry is an extremely powerful technique for analysis of biological molecules, in particular proteins. One aspect that has been contentious is how much native solution-phase structure is preserved upon transposition to the gas phase by soft ionization methods such as electrospray ionization. To address this question-and thus further develop mass spectrometry as a tool for structural biology-structure-sensitive techniques must be developed to probe the gas-phase conformations of proteins. Here, we report Förster resonance energy transfer (FRET) measurements on a ubiquitin mutant using specific photofragmentation as a reporter of the FRET efficiency. The FRET data is interpreted in the context of circular dichroism, molecular dynamics simulation, and ion mobility data. Both the dependence of the FRET efficiency on the charge state-where a systematic decrease is observed-and on methanol concentration are considered. In the latter case, a decrease in FRET efficiency with methanol concentration is taken as evidence that the conformational ensemble of gaseous protein cations retains a memory of the solution phase conformational ensemble upon electrospray ionization. Graphical Abstract ᅟ.

Indexed as

Amino Acid SequenceAnimalsCationsCattleCircular DichroismFluorescence Resonance Energy TransferGasesMolecular Dynamics SimulationMutationProtein ConformationSpectrometry, Mass, Electrospray IonizationStatic ElectricityUbiquitinCationsGasesUbiquitinAction FRETFRETMolecular dynamicsUbiquitin

Identifiers

PMID27506208
PMCPMC5174150

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.