Evidence map›Paper›PMID 27504786›Full record

ArticleAnalytical chemistry2016

Structural Characterization of Serum N-Glycans by Methylamidation, Fluorescent Labeling, and Analysis by Microchip Electrophoresis.

Indranil Mitra, Christa M Snyder, Xiaomei Zhou, Margit I Campos, William R Alley, Milos V Novotny, Stephen C Jacobson

Open access · greenAbstract read
In one paragraph

Article in Analytical chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 49 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Indranil MitraDepartment of Chemistry, Indiana University , Bloomington, Indiana 47405, United States.
Christa M SnyderDepartment of Chemistry, Indiana University , Bloomington, Indiana 47405, United States.
Xiaomei ZhouDepartment of Chemistry, Indiana University , Bloomington, Indiana 47405, United States.
Margit I CamposDepartment of Chemistry, Indiana University , Bloomington, Indiana 47405, United States.
William R AlleyDepartment of Chemistry, Indiana University , Bloomington, Indiana 47405, United States.
Milos V NovotnyDepartment of Chemistry, Indiana University , Bloomington, Indiana 47405, United States.
Stephen C JacobsonDepartment of Chemistry, Indiana University , Bloomington, Indiana 47405, United States.
Indiana University Bloomington · US

Funding

ULTRASENSITIVE METHODS FOR GLYCOCONJUGATE ANALYSISR01GM024349 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI NOVOTNY, MILOS · 1985 to 2014
$2.9M
Microfluidic Devices for Cancer Screening by N-Glycan AnalysisR01GM106084 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI JACOBSON, STEPHEN C · 2014 to 2017
$1.2M
NIGMS NIH HHS R01 GM024349NIGMS NIH HHS R01 GM106084
6 · The paper itself

Abstract

To characterize the structures of N-glycans derived from human serum, we report a strategy that combines microchip electrophoresis, standard addition, enzymatic digestion, and matrix-assisted laser desorption/ionization-mass spectrometry (MALDI-MS). We compared (i) electrophoretic mobilities of known N-glycans from well-characterized (standard) glycoproteins through standard addition, (ii) the electrophoretic mobilities of N-glycans with their molecular weights determined by MALDI-MS, and (iii) electrophoretic profiles of N-glycans enzymatically treated with fucosidase. The key step to identify the sialylated N-glycans was to quantitatively neutralize the negative charge on both α2,3- and α2,6-linked sialic acids by covalent derivatization with methylamine. Both neutralized and nonsialylated N-glycans from these samples were then reacted with 8-aminopyrene-1,3,6-trisulfonic acid (APTS) to provide a fluorescent label and a triple-negative charge, separated by microchip electrophoresis, and detected by laser-induced fluorescence. The methylamidation step leads to a 24% increase in the peak capacity of the separation and direct correlation of electrophoretic and MALDI-MS results. In total, 37 unique N-glycan structures were assigned to 52 different peaks recorded in the electropherograms of the serum samples. This strategy ensures the needed separation efficiency and detectability, easily resolves linkage and positional glycan isomers, and is highly reproducible.

Indexed as

Electrophoresis, MicrochipFluorescent DyesHumansMethylaminesPolysaccharidesPyrenesSialic AcidsSpectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization1-aminopyrene-3,6,8-trisulfonic acidFluorescent DyesmethylamineMethylaminesPolysaccharidesPyrenesSialic Acids

Identifiers

PMID27504786
PMCPMC5097868
OpenAlexW2509881265

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.