Evidence map›Paper›PMID 27504175›Full record

ArticleElectronic physician2016

Visual Detection of Enterohemorrhagic Escherichia coli O157:H7 Using Loop-Mediated Isothermal Amplification.

Reza Ranjbar, Maryam Erfanmanesh, Davoud Afshar, Mohsen Mohammadi, Omar Ghaderi, Ali Haghnazari

Open access · goldAbstract read
In one paragraph

Article in Electronic physician, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Development and Validation of the MAST ISOPLEXInternational journal of molecular sciences · 2024
    Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Point-of-Care Lateral Flow Detection of ViableFoods (Basel, Switzerland) · 2022
    Article
  9. Identification of differentIranian journal of microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Reza RanjbarPh.D. of Medical Bacteriology, Professor, Molecular Biology Research Center, Baqiyatallah University of Medical Sciences, Tehran, Iran.
Maryam ErfanmaneshM.Sc. of Biotechnology, Department of Agriculture and Plant Breeding, Faculty of Agriculture, Zanjan University, Zanjan, Iran.
Davoud AfsharPh.D. of Medical Bacteriology, Department of Pathobiology, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran.
Mohsen MohammadiPh.D. of Pharmaceutical Biotechnology, Assistant Professor, Department of Pharmaceutical Biotechnology, Faculty of Pharmacy, Lorestan University of Medical Sciences, Khorramabad, Iran.
Omar GhaderiPh.D. Candidate of Pharmaceutical Biotechnology, Department of Pharmaceutical Biotechnology, Tehran University of Medical Sciences, Tehran, Iran.
Ali HaghnazariDepartment of Agriculture and Plant Breeding, Faculty of Agriculture, Zanjan University, Zanjan, Iran.
Tehran University of Medical Sciences · IRUniversity of Zanjan · IRBaqiyatallah University of Medical Sciences · IRLorestan University of Medical Sciences · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionEscherichia coli O157:H7, an important foodborne pathogen, can cause serious renal damage, which can also lead to mortality. Since a rapid and sensitive method is needed to identify this pathogenic agent, we evaluated Loop-Mediated Isothermal Amplification Assay (LAMP) to detect Escherichia coli O157:H7.

methodsWe used six primers that specifically identified the rfbE gene. To examine the sensitivity of the method, different dilutions were subjected to the LAMP reaction. Other bacterial strains also were investigated to determine the specificity of the test. The turbidity of the amplified products was assayed by visual detection. The amplified products were detected by addition of SYBR Green II to the reaction tubes.

resultsAmplification products were observed as a ladder-like pattern on the agarose gel. A white turbidity emerged in the positive tubes. Under UV light, the positive samples were green, whereas the negative samples were orange. The detection limit of the LAMP was 78 pg/tube, and this indicated that it was 100 times more sensitive than PCR for the detection of EHEC. No LAMP products were detected when template DNA of non-EHEC strains were used, suggesting high specificity of the LAMP assay.

conclusionThe results indicated that the LAMP assay is a valuable diagnostic assay to identify EHEC O157:H7. In addition, the simplicity, sensitivity, specificity, and rapidity of this assay make it a useful method to diagnose pathogens in primary labs without any need for expensive equipment or specialized techniques.

Indexed as

Enterohemorrhagic Escherichia coli O157:H7Loop-Mediated Isothermal AmplificationrfbE geneSYBR Green II

Identifiers

PMID27504175
PMCPMC4965210
OpenAlexW2499335521

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.