ArticleDatabase : the journal of biological databases and curation2016
MODEM: multi-omics data envelopment and mining in maize.
Article in Database : the journal of biological databases and curation, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
19 citing papers in PubMed, 49 citations in OpenAlex.
- Genome-wide association study dissects the genetic architecture of kernel rate and its component traits in maize.BMC plant biology · 2026Article
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- Transcriptomics, proteomics, and metabolomics interventions prompt crop improvement against metal(loid) toxicity.Plant cell reports · 2024Review
- Maize Feature Store: A centralized resource to manage and analyze curated maize multi-omics features for machine learning applications.Database : the journal of biological databases and curation · 2023Article
- The hitchhikers' guide to RNA sequencing and functional analysis.Briefings in bioinformatics · 2023Article
- Deciphering Pleiotropic Signatures of Regulatory SNPs inInternational journal of molecular sciences · 2022Article
- The utility of metabolomics as a tool to inform maize biology.Plant communications · 2021Review
- Advances in "Omics" Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants.Frontiers in plant science · 2021Review
- WinRoots: A High-Throughput Cultivation and Phenotyping System for Plant Phenomics Studies Under Soil Stress.Frontiers in plant science · 2021Article
- An embedded gene selection method using knockoffs optimizing neural network.BMC bioinformatics · 2020Article
- Article
- The Past, Present, and Future of Maize Improvement: Domestication, Genomics, and Functional Genomic Routes toward Crop Enhancement.Plant communications · 2020Review
- State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing.Frontiers in genetics · 2020Review
- MaizeCUBIC: a comprehensive variation database for a maize synthetic population.Database : the journal of biological databases and curation · 2020Article
- Kernel size-related genes revealed by an integrated eQTL analysis during early maize kernel development.The Plant journal : for cell and molecular biology · 2019Article
- Intraspecific variation of residual heterozygosity and its utility for quantitative genetic studies in maize.BMC plant biology · 2018Article
- The Genetic Basis of Plant Architecture in 10 Maize Recombinant Inbred Line Populations.Plant physiology · 2017Article
- The genetic architecture of amino acids dissection by association and linkage analysis in maize.Plant biotechnology journal · 2017Article
- Verification of Three-Phase Dependency Analysis Bayesian Network Learning Method for Maize Carotenoid Gene Mining.BioMed research international · 2017Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
13 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
MODEM is a comprehensive database of maize multidimensional omics data, including genomic, transcriptomic, metabolic and phenotypic information from the cellular to individual plant level. This initial release contains approximately 1.06 M high quality SNPs for 508 diverse inbred lines obtained by combining variations from RNA sequencing on whole kernels (15 days after pollination) of 368 lines and a 50 K array for all 508 individuals. As all of these data were derived from the same diverse panel of lines, the database also allows various types of genetic mapping (including characterization of phenotypic QTLs, pQTLs; expression QTLs, eQTLs and metabolic QTLs, mQTLs). MODEM is thus designed to promote a better understanding of maize genetic architecture and deep functional annotation of the complex maize genome (and potentially those of other crop plants) and to explore the genotype-phenotype relationships and regulation of maize kernel development at multiple scales, which is also comprehensive for developing novel methods. MODEM is additionally designed to link with other databases to make full use of current resources, and it provides visualization tools for easy browsing. All of the original data and the related mapping results are freely available for easy query and download. This platform also provides helpful tools for general analyses and will be continually updated with additional materials, features and public data related to maize genetics or regulation as they become available.Database URL: (http://modem.hzau.edu.cn).
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.