Evidence map›Paper›PMID 27503876›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Regulatory evolution of Tbx5 and the origin of paired appendages.

Noritaka Adachi, Molly Robinson, Aden Goolsbee, Neil H Shubin

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Article
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  7. Article
  8. The genetic basis of novel trait gain in walking fish.bioRxiv : the preprint server for biology · 2023
    Article
  9. Article
  10. Review
  11. Article
  12. Limb positioning and initiation: An evolutionary context of pattern and formation.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Review
  13. Article
  14. Article
  15. Article
  16. Developmental constraints on fin diversity.Development, growth & differentiation · 2020
    Review
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Noritaka AdachiDepartment of Organismal Biology and Anatomy, University of Chicago, Chicago, IL 60637;
Molly RobinsonDepartment of Organismal Biology and Anatomy, University of Chicago, Chicago, IL 60637;
Aden GoolsbeeLaboratory Schools, University of Chicago, Chicago, IL 60637.
Neil H ShubinDepartment of Organismal Biology and Anatomy, University of Chicago, Chicago, IL 60637; nshubin@uchicago.edu.
University of Chicago · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The diversification of paired appendages has been a major factor in the evolutionary radiation of vertebrates. Despite its importance, an understanding of the origin of paired appendages has remained elusive. To address this problem, we focused on T-box transcription factor 5 (Tbx5), a gene indispensable for pectoral appendage initiation and development. Comparison of gene expression in jawless and jawed vertebrates reveals that the Tbx5 expression in jawed vertebrates is derived in having an expression domain that extends caudal to the heart and gills. Chromatin profiling, phylogenetic footprinting, and functional assays enabled the identification of a Tbx5 fin enhancer associated with this apomorphic pattern of expression. Comparative functional analysis of reporter constructs reveals that this enhancer activity is evolutionarily conserved among jawed vertebrates and is able to rescue the finless phenotype of tbx5a mutant zebrafish. Taking paleontological evidence of early vertebrates into account, our results suggest that the gain of apomorphic patterns of Tbx5 expression and regulation likely contributed to the morphological transition from a finless to finned condition at the base of the vertebrate lineage.

Indexed as

Biological EvolutionGene Expression Regulation, DevelopmentalPhylogenyAnimal FinsAnimalsAnimals, Genetically ModifiedChromatinDNA FootprintingEmbryo, NonmammalianGenes, ReporterGreen Fluorescent ProteinsHumansJawLampreysT-Box Domain ProteinsZebrafishChromatinGreen Fluorescent ProteinsT-Box Domain ProteinsT-box transcription factor 5developmentevolutionpaired finsTbx5 enhancer

Identifiers

PMID27503876
PMCPMC5018757
OpenAlexW2519212565

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.