Evidence map›Paper›PMID 27502322›Full record

ArticleScientific reports2016

In-Depth Characterization and Validation of Human Urine Metabolomes Reveal Novel Metabolic Signatures of Lower Urinary Tract Symptoms.

Ling Hao, Tyler Greer, David Page, Yatao Shi, Chad M Vezina, Jill A Macoska, Paul C Marker, Dale E Bjorling, Wade Bushman, William A Ricke and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Urinary Amine Metabolomics Characterization with Custom 12-Plex Isobaric DiLeu Labeling.Journal of the American Society for Mass Spectrometry · 2020
    Article
  11. Article
  12. Article
  13. Targeting a fibrotic bottleneck may provide an opening in the treatment of LUTS.American journal of physiology. Renal physiology · 2019
    Article
  14. Article
  15. Article
  16. Article
  17. Personalized medicine-concepts, technologies, and applications in inflammatory skin diseases.APMIS : acta pathologica, microbiologica, et immunologica Scandinavica · 2019
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Ling HaoSchool of Pharmacy, University of Wisconsin-Madison, Madison, WI, 53705, USA.
Tyler GreerDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.
David PageDepartment of Biostatistics &Medical Informatics, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Yatao ShiSchool of Pharmacy, University of Wisconsin-Madison, Madison, WI, 53705, USA.
Chad M VezinaSchool of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Jill A MacoskaCenter for Personalized Cancer Therapy, University of Massachusetts, Boston, MA, 02125, USA.
Paul C MarkerSchool of Pharmacy, University of Wisconsin-Madison, Madison, WI, 53705, USA.
Dale E BjorlingSchool of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Wade BushmanDepartment of Urology, University of Wisconsin-Madison, Madison, WI, 53792, USA.
William A RickeDepartment of Urology, University of Wisconsin-Madison, Madison, WI, 53792, USA.
Lingjun LiSchool of Pharmacy, University of Wisconsin-Madison, Madison, WI, 53705, USA.

Funding

Role of Beta-Catenin in Urinary DysfunctionU54DK104310 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI RICKE, WILLIAM A · 2014 to 2023
$12.8M
Acquisition of a High-Field Dual Source FTICR-MS for Pharmaceutical ResearchS10RR029531 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI LI, LINGJUN · 2011 to 2011
$2.1M
Steroid hormones and SFRP1 in the age-related incidence of BPH and BOOR01DK091193 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI MARKER, PAUL C · 2011 to 2015
$1.6M
Role of DNA methylation in prostate glandular development and urinary functionR01DK099328 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI VEZINA, CHAD M. · 2014 to 2018
$1.6M
Estrogen Regulation in BPH and the Lower Urinary TractR01DK093690 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI RICKE, WILLIAM A · 2011 to 2014
$1.3M
Urinary Biomarkers of Lower Urinary Traxct Symptoms (LUTS) in Men P20DK097826 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI BUSHMAN, WADE A · 2012 to 2014
$776k
NCRR NIH HHS S10 RR029531NIDDK NIH HHS P20 DK097826NIDDK NIH HHS R01 DK091193NIDDK NIH HHS R01 DK093690NIDDK NIH HHS R01 DK099328NIDDK NIH HHS U54 DK104310
6 · The paper itself

Abstract

Lower urinary tract symptoms (LUTS) are a range of irritative or obstructive symptoms that commonly afflict aging population. The diagnosis is mostly based on patient-reported symptoms, and current medication often fails to completely eliminate these symptoms. There is a pressing need for objective non-invasive approaches to measure symptoms and understand disease mechanisms. We developed an in-depth workflow combining urine metabolomics analysis and machine learning bioinformatics to characterize metabolic alterations and support objective diagnosis of LUTS. Machine learning feature selection and statistical tests were combined to identify candidate biomarkers, which were statistically validated with leave-one-patient-out cross-validation and absolutely quantified by selected reaction monitoring assay. Receiver operating characteristic analysis showed highly-accurate prediction power of candidate biomarkers to stratify patients into disease or non-diseased categories. The key metabolites and pathways may be possibly correlated with smooth muscle tone changes, increased collagen content, and inflammation, which have been identified as potential contributors to urinary dysfunction in humans and rodents. Periurethral tissue staining revealed a significant increase in collagen content and tissue stiffness in men with LUTS. Together, our study provides the first characterization and validation of LUTS urinary metabolites and pathways to support the future development of a urine-based diagnostic test for LUTS.

Indexed as

MetabolomeAmino AcidsArea Under CurveBiomarkersChromatography, High Pressure LiquidCollagenHumansLower Urinary Tract SymptomsMachine LearningMaleMetabolomicsProstateQuality ControlROC CurveSpectrometry, Mass, Electrospray IonizationAmino AcidsBiomarkersCollagen

Identifiers

PMID27502322
PMCPMC4977550

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.