Evidence map›Paper›PMID 27501781›Full record

ArticleNature communications2016

Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.

Kouya Shiraishi, Yukinori Okada, Atsushi Takahashi, Yoichiro Kamatani, Yukihide Momozawa, Kyota Ashikawa, Hideo Kunitoh, Shingo Matsumoto, Atsushi Takano, Kimihiro Shimizu and 36 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 5 pooled it
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 5 syntheses or guidelines pooled it, 58 citations in OpenAlex.

  1. Pooled it
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  6. Review
  7. Article
  8. Polygenic Risk Score and Lung Adenocarcinoma Risk Among Never-Smokers by EGFR Mutation Status: A Brief Report.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2025
    Article
  9. Overcoming EGFR-TKI resistance by targeting the tumor microenvironment.Chinese medical journal pulmonary and critical care medicine · 2024
    Review
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  19. The emerging role of ISWI chromatin remodeling complexes in cancer.Journal of experimental & clinical cancer research : CR · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

46 authors at 17 institutions in 3 countries.

Kouya ShiraishiDivision of Genome Biology, National Cancer Center Research Institute, Tokyo 104-0045, Japan.
Yukinori OkadaDepartment of Human Genetics and Disease Diversity, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo 113-8510, Japan.
Atsushi TakahashiLaboratory for Statistical Analysis, RIKEN Center for Integrative Medical Sciences, Yokohama 230-0045, Japan.
Yoichiro KamataniLaboratory for Statistical Analysis, RIKEN Center for Integrative Medical Sciences, Yokohama 230-0045, Japan.
Yukihide MomozawaLaboratory for Genotyping Development, Center for Integrative Medical Sciences, RIKEN, Yokohama 113-8510, Japan.
Kyota AshikawaLaboratory for Genotyping Development, Center for Integrative Medical Sciences, RIKEN, Yokohama 113-8510, Japan.
Hideo KunitohDepartment of Medical Oncology, Japanese Red Cross Medical Center, Tokyo 150-0012, Japan.
Shingo MatsumotoDivision of Translational Research, Exploratory Oncology Research and Clinical Trial Center (EPOC), National Cancer Center Research Institute, Chiba 277-0882, Japan.
Atsushi TakanoCenter for Antibody and Vaccine Therapy, Research Hospital, Institute of Medical Science, The University of Tokyo, Tokyo 108-0071, Japan.
Kimihiro ShimizuDepartment of Integrative Center of General Surgery, Gunma University Hospital, Gunma 371-8511, Japan.
Akiteru GotoDepartment of Cellular and Organ Pathology, Graduate School of Medicine, Akita University, Akita 010-8543, Japan.
Koji TsutaDepartment of Pathology, National Cancer Center Hospital, Tokyo 104-0045, Japan.
Shun-Ichi WatanabeDivision of Thoracic Surgery, National Cancer Centre Hospital, Tokyo 104-0045, Japan.
Yuichiro OheDepartment of Thoracic Oncology, National Cancer Center Hospital, Tokyo 104-0045, Japan.
Yukio WatanabeDivision of Thoracic Surgery, National Cancer Centre Hospital, Tokyo 104-0045, Japan.
Yasushi GotoDepartment of Thoracic Oncology, National Cancer Center Hospital, Tokyo 104-0045, Japan.
Hiroshi NokiharaDepartment of Thoracic Oncology, National Cancer Center Hospital, Tokyo 104-0045, Japan.
Koh FurutaDepartment of Clinical Laboratories, National Cancer Center Hospital, Tokyo 104-0045, Japan.
Akihiko YoshidaDepartment of Pathology, National Cancer Center Hospital, Tokyo 104-0045, Japan.
Koichi GotoDepartment of Thoracic Oncology, National Cancer Center Hospital East, Chiba 277-0882, Japan.
Tomoyuki HishidaDepartment of Thoracic Surgery, National Cancer Center Hospital East, Chiba 277-0882, Japan.
Masahiro TsuboiDepartment of Thoracic Surgery, National Cancer Center Hospital East, Chiba 277-0882, Japan.
Katsuya TsuchiharaDivision of Translational Research, Exploratory Oncology Research and Clinical Trial Center (EPOC), National Cancer Center Research Institute, Chiba 277-0882, Japan.
Yohei MiyagiMolecular Pathology and Genetics Division, Kanagawa Cancer Center Research Institute, Kanagawa 241-0815, Japan.
Haruhiko NakayamaDepartment of Thoracic Surgery, Kanagawa Cancer Center, Kanagawa 241-0815, Japan.
Tomoyuki YokoseDepartment of Pathology, Kanagawa Cancer Center, Kanagawa 241-0815, Japan.
Kazumi TanakaDepartment of Integrative Center of General Surgery, Gunma University Hospital, Gunma 371-8511, Japan.
Toshiteru NagashimaDepartment of Integrative Center of General Surgery, Gunma University Hospital, Gunma 371-8511, Japan.
Yoichi OhtakiDepartment of Integrative Center of General Surgery, Gunma University Hospital, Gunma 371-8511, Japan.
Daichi MaedaDepartment of Cellular and Organ Pathology, Graduate School of Medicine, Akita University, Akita 010-8543, Japan.
Kazuhiro ImaiDepartment of Thoracic Surgery, Graduate School of Medicine, Akita University, Akita 010-8543, Japan.
Yoshihiro MinamiyaDepartment of Thoracic Surgery, Graduate School of Medicine, Akita University, Akita 010-8543, Japan.
Hiromi SakamotoDivision of Genetics, National Cancer Center Research Institute, Tokyo 104-0045, Japan.
Akira SaitoStaGen Co., Ltd., Tokyo 111-0051, Japan.
Yoko ShimadaDivision of Genome Biology, National Cancer Center Research Institute, Tokyo 104-0045, Japan.
Kuniko SunamiDivision of Genome Biology, National Cancer Center Research Institute, Tokyo 104-0045, Japan.
Motonobu SaitoDivision of Genome Biology, National Cancer Center Research Institute, Tokyo 104-0045, Japan.
Johji InazawaDepartment of Molecular Cytogenetics, Medical Research Institute, Tokyo Medical and Dental University, Tokyo 113-8510, Japan.
Yusuke NakamuraDepartment of Medicine and Department of Surgery, Center for Personalized Therapeutics, The University of Chicago, Chicago 60637, USA.
Teruhiko YoshidaDivision of Genetics, National Cancer Center Research Institute, Tokyo 104-0045, Japan.
Jun YokotaGenomics and Epigenomics of Cancer Prediction Program, Institute of Predictive and Personalized Medicine of Cancer (IMPPC), 08916 Badalona, Spain.
Fumihiko MatsudaCenter for Genomic Medicine, Graduate School of Medicine, Kyoto University, Kyoto 606-8501, Japan.
Keitaro MatsuoDivision of Division of Molecular Medicine, Aichi Cancer Center Research Institute, Chikusa-ku, Nagoya 464-8681, Japan.
Yataro DaigoCenter for Antibody and Vaccine Therapy, Research Hospital, Institute of Medical Science, The University of Tokyo, Tokyo 108-0071, Japan.
Michiaki KuboLaboratory for Genotyping Development, Center for Integrative Medical Sciences, RIKEN, Yokohama 113-8510, Japan.
Takashi KohnoDivision of Genome Biology, National Cancer Center Research Institute, Tokyo 104-0045, Japan.
National Cancer Centre Japan · JPRIKEN Center for Integrative Medical Sciences · JPAkita University · JPGunma University Hospital · JPTokyo National Hospital · JPKanagawa Cancer CenterNational Cancer Center Hospital East · JPChiba Cancer Center · JPAichi Cancer Center · JPInstitute of Predictive and Personalized Medicine of Cancer · ESJapanese Red Cross Medical Center · JPKyoto University · JPShiga University of Medical Science · JPStaGen (Japan) · JPTokyo Medical and Dental University · JPUniversity of Chicago · USUniversity of Tokyo Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lung adenocarcinoma driven by somatic EGFR mutations is more prevalent in East Asians (30-50%) than in European/Americans (10-20%). Here we investigate genetic factors underlying the risk of this disease by conducting a genome-wide association study, followed by two validation studies, in 3,173 Japanese patients with EGFR mutation-positive lung adenocarcinoma and 15,158 controls. Four loci, 5p15.33 (TERT), 6p21.3 (BTNL2), 3q28 (TP63) and 17q24.2 (BPTF), previously shown to be strongly associated with overall lung adenocarcinoma risk in East Asians, were re-discovered as loci associated with a higher susceptibility to EGFR mutation-positive lung adenocarcinoma. In addition, two additional loci, HLA class II at 6p21.32 (rs2179920; P =5.1 × 10(-17), per-allele OR=1.36) and 6p21.1 (FOXP4) (rs2495239; P=3.9 × 10(-9), per-allele OR=1.19) were newly identified as loci associated with EGFR mutation-positive lung adenocarcinoma. This study indicates that multiple genetic factors underlie the risk of lung adenocarcinomas with EGFR mutations.

Indexed as

Genetic Predisposition to DiseaseAdenocarcinomaAdenocarcinoma of LungErbB ReceptorsForkhead Transcription FactorsGenetic LociGenome-Wide Association StudyHistocompatibility Antigens Class IIHumansLung NeoplasmsMutationPolymorphism, Single NucleotideReproducibility of ResultsRisk FactorsErbB ReceptorsForkhead Transcription FactorsFOXP4 protein, humanHistocompatibility Antigens Class II

Identifiers

PMID27501781
PMCPMC4980483
OpenAlexW2485259790

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.