Evidence map›Paper›PMID 27500636›Full record

ArticlePloS one2016

Virtual Hematoxylin and Eosin Transillumination Microscopy Using Epi-Fluorescence Imaging.

Michael G Giacomelli, Lennart Husvogt, Hilde Vardeh, Beverly E Faulkner-Jones, Joachim Hornegger, James L Connolly, James G Fujimoto

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
17.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 116 citations in OpenAlex.

  1. Review
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  13. Single color digital H&E staining with In-and-Out Net.Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society · 2024
    Article
  14. Rapid examination of lung tissues by nonlinear microscopy.American journal of clinical pathology · 2024
    Article
  15. Article
  16. Virtual Staining of Nonfixed Tissue Histology.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2024
    Review
  17. Article
  18. Review
  19. Article
  20. Engineering the future of 3D pathology.The journal of pathology. Clinical research · 2024
    Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Michael G GiacomelliDepartment of Electrical Engineering and Computer Science and Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, Massachusetts, 02139, United States of America.ORCID http://orcid.org/0000-0002-2570-0770
Lennart HusvogtPattern Recognition Lab, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Erlangen-Nürnberg, Germany.
Hilde VardehDepartment of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, United States of America.
Beverly E Faulkner-JonesDepartment of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, United States of America.
Joachim HorneggerGraduate School in Advanced Optical Technologies, Friedrich-Alexander University Erlangen-Nürnberg (FAU), Erlangen-Nürnberg, Germany.
James L ConnollyDepartment of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, United States of America.
James G FujimotoDepartment of Electrical Engineering and Computer Science and Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, Massachusetts, 02139, United States of America.
Beth Israel Deaconess Medical Center · USFriedrich-Alexander-Universität Erlangen-Nürnberg · DEMassachusetts Institute of Technology · US

Funding

OPTICAL BIOPSY USING OPTICAL COHERENCE TOMOGRAPHYR01CA075289 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI FUJIMOTO, JAMES G, MASHIMO, HIROSHI · 1997 to 2018
$4.8M
Intraoperative real time breast cancer margin assessment with nonlinear microscopR01CA178636 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI CONNOLLY, JAMES, FUJIMOTO, JAMES G · 2013 to 2018
$1.7M
Two-Photon Fluorescence Lifetime Microscopy for Breast and Thyroid Cancer MarginF32CA183400 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GIACOMELLI, MICHAEL GENE · 2014 to 2016
$164k
NCI NIH HHS F32 CA183400NCI NIH HHS R01 CA075289NCI NIH HHS R01 CA178636
6 · The paper itself

Abstract

We derive a physically realistic model for the generation of virtual transillumination, white light microscopy images using epi-fluorescence measurements from thick, unsectioned tissue. We demonstrate this technique by generating virtual transillumination H&E images of unsectioned human breast tissue from epi-fluorescence multiphoton microscopy data. The virtual transillumination algorithm is shown to enable improved contrast and color accuracy compared with previous color mapping methods. Finally, we present an open source implementation of the algorithm in OpenGL, enabling real-time GPU-based generation of virtual transillumination microscopy images using conventional fluorescence microscopy systems.

Indexed as

AlgorithmsBreastBreast NeoplasmsEosine Yellowish-(YS)FemaleHematoxylinHumansImage Interpretation, Computer-AssistedMicroscopy, FluorescenceTransilluminationEosine Yellowish-(YS)Hematoxylin

Identifiers

PMID27500636
PMCPMC4976978
OpenAlexW2517736342

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.