Evidence map›Paper›PMID 27499564›Full record

ArticleJournal of the American Statistical Association2016

Asymptotically Normal and Efficient Estimation of Covariate-Adjusted Gaussian Graphical Model.

Mengjie Chen, Zhao Ren, Hongyu Zhao, Harrison Zhou

Abstract read
In one paragraph

Article in Journal of the American Statistical Association, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Multi-task Learning for Gaussian Graphical Regressions with High Dimensional Covariates.Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America · 2024
    Article
  4. Article
  5. Scalable network estimation withStatistical analysis and data mining · 2021
    Article
  6. Bayesian Structure Learning in Multi-layered Genomic Networks.Journal of the American Statistical Association · 2021
    Article
  7. Article
  8. RANK: Large-Scale Inference with Graphical Nonlinear Knockoffs.Journal of the American Statistical Association · 2020
    Article
  9. Geospatial analysis and assessment ofEnvironmental monitoring and assessment · 2019
    Article
  10. False discovery rate control for high dimensional networks of quantile associations conditioning on covariates.Journal of the Royal Statistical Society. Series B, Statistical methodology · 2018
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Mengjie ChenProgram of Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA.
Zhao RenDepartment of Statistics, Yale University, New Haven, CT 06520, USA.
Hongyu ZhaoDepartment of Biostatistics, School of Public Health, Yale University, New Haven, CT 06520, USA.
Harrison ZhouDepartment of Statistics, Yale University, New Haven, CT 06520, USA.

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI DAVID L RIMM · 1985 to 2026
$85.0M
Statistical Methods for Cancer Clinical TrialsP01CA142538 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVIDIAN, MARIE, KOSOROK, MICHAEL R · 2010 to 2019
$21.3M
Clinical Study of PHY906, a Novel Chinese Herbal Medicine, as a Modulator of IrinP01CA154295 · NCI · YALE UNIVERSITY · PI CHENG, YUNG-CHI · 2011 to 2016
$6.4M
STATISTICAL METHODS IN CURRENT CANCER RESEARCHR01CA082659 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LIN, DANYU · 2000 to 2016
$3.7M
STATISTICAL METHODS TO MAP GENES FOR COMPLEX TRAITSR01GM059507 · NIGMS · YALE UNIVERSITY · PI ZHAO, HONGYU · 1999 to 2013
$3.6M
YALE BIOMEDICAL SUPERCOMPUTER: NEUROSCIENCES10RR019895 · NCRR · YALE UNIVERSITY · PI WILLIAMS, KENNETH ROBERT · 2004 to 2004
$1.6M
High Performance Computing Instrumentation for Yale University Biomedical HPC CenS10RR029676 · NCRR · YALE UNIVERSITY · PI BJORNSON, ROBERT DEAN · 2011 to 2011
$588k
NCATS NIH HHS UL1 TR001863NCI NIH HHS P01 CA142538NCI NIH HHS P01 CA154295NCI NIH HHS P30 CA016359NCI NIH HHS R01 CA082659NCRR NIH HHS S10 RR019895NCRR NIH HHS S10 RR029676NIGMS NIH HHS R01 GM059507
6 · The paper itself

Abstract

A tuning-free procedure is proposed to estimate the covariate-adjusted Gaussian graphical model. For each finite subgraph, this estimator is asymptotically normal and efficient. As a consequence, a confidence interval can be obtained for each edge. The procedure enjoys easy implementation and efficient computation through parallel estimation on subgraphs or edges. We further apply the asymptotic normality result to perform support recovery through edge-wise adaptive thresholding. This support recovery procedure is called ANTAC, standing for Asymptotically Normal estimation with Thresholding after Adjusting Covariates. ANTAC outperforms other methodologies in the literature in a range of simulation studies. We apply ANTAC to identify gene-gene interactions using an eQTL dataset. Our result achieves better interpretability and accuracy in comparison with CAMPE.

Indexed as

eQTLGene regulatory networkHigh-dimensional statisticsPrecision matrix estimationSparsitySupport recovery

Identifiers

PMID27499564
PMCPMC4974017

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.