Evidence map›Paper›PMID 27499441›Full record

ArticleStructure (London, England : 1993)2016

Structural Basis for the Recognition of Eukaryotic Elongation Factor 2 Kinase by Calmodulin.

Kwangwoon Lee, Sébastien Alphonse, Andrea Piserchio, Clint D J Tavares, David H Giles, Rebecca M Wellmann, Kevin N Dalby, Ranajeet Ghose

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
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  10. Top-Down Analysis of Proteins in Low Charge States.Journal of the American Society for Mass Spectrometry · 2019
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Kwangwoon LeeDepartment of Chemistry and Biochemistry, The City College of New York, New York, NY 10031, USA; Graduate Program in Biochemistry, The Graduate Center of CUNY, New York, NY 10016, USA.
Sébastien AlphonseDepartment of Chemistry and Biochemistry, The City College of New York, New York, NY 10031, USA.
Andrea PiserchioDepartment of Chemistry and Biochemistry, The City College of New York, New York, NY 10031, USA.
Clint D J TavaresGraduate Program in Cell and Molecular Biology, University of Texas, Austin, TX 78712, USA.
David H GilesDivision of Chemical Biology and Medicinal Chemistry, University of Texas, Austin, TX 78712, USA.
Rebecca M WellmannDivision of Chemical Biology and Medicinal Chemistry, University of Texas, Austin, TX 78712, USA.
Kevin N DalbyGraduate Program in Cell and Molecular Biology, University of Texas, Austin, TX 78712, USA; Division of Chemical Biology and Medicinal Chemistry, University of Texas, Austin, TX 78712, USA.
Ranajeet GhoseDepartment of Chemistry and Biochemistry, The City College of New York, New York, NY 10031, USA; Graduate Program in Biochemistry, The Graduate Center of CUNY, New York, NY 10016, USA; Graduate Program in Chemistry, The Graduate Center of CUNY, New York, NY 10016, USA; Graduate Program in Physics, The Graduate Center of CUNY, New York, NY 10016, USA. Electronic address: rghose@ccny.cuny.edu.
The University of Texas at Austin · USCity College of New York · USThe Graduate Center, CUNY · US

Funding

TNC FUNCTION IN APOPTOTIC ANTIGEN DRIVEN AUTOIMMUNITYG12RR003060 · NCRR · CITY COLLEGE OF NEW YORK · PI WALLMAN, JOSHUA · 1985 to 2011
$26.1M
Cellular/Molecular Basis of Development: Research CenterG12MD007603 · NIMHD · CITY COLLEGE OF NEW YORK · PI PEZZANO, MARK · 2012 to 2017
$11.5M
Mechanism and Specificity of MAP KinasesR01GM059802 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI DALBY, KEVIN N · 2001 to 2011
$2.3M
Catalytic Domain Dynamics in Protein KinasesR01GM084278 · NIGMS · CITY COLLEGE OF NEW YORK · PI GHOSE, RANAJEET · 2009 to 2013
$1.6M
NCRR NIH HHS G12 RR003060NIGMS NIH HHS R01 GM059802NIGMS NIH HHS R01 GM084278NIMHD NIH HHS G12 MD007603
6 · The paper itself

Abstract

Binding of Ca(2+)-loaded calmodulin (CaM) activates eukaryotic elongation factor 2 kinase (eEF-2K) that phosphorylates eEF-2, its only known cellular target, leading to a decrease in global protein synthesis. Here, using an eEF-2K-derived peptide (eEF-2KCBD) that encodes the region necessary for its CaM-mediated activation, we provide a structural basis for their interaction. The striking feature of this association is the absence of Ca(2+) from the CaM C-lobe sites, even under high Ca(2+) conditions. eEF-2KCBD engages CaM largely through the C lobe of the latter in an anti-parallel 1-5-8 hydrophobic mode reinforced by a pair of unique electrostatic contacts. Sparse interactions of eEF-2KCBD with the CaM N lobe results in persisting inter-lobe mobility. A conserved eEF-2K residue (W85) anchors it to CaM by inserting into a deep hydrophobic cavity within the CaM C lobe. Mutation of this residue (W85S) substantially weakens interactions between full-length eEF-2K and CaM in vitro and reduces eEF-2 phosphorylation in cells.

Indexed as

Amino Acid SequenceBinding SitesCalciumCalmodulinCell Line, TumorCrystallography, X-RayElongation Factor 2 KinaseEpithelial CellsGene ExpressionHumansHydrophobic and Hydrophilic InteractionsModels, MolecularPeptide Elongation FactorsPeptidesPhosphorylationProtein BindingCalciumCalmodulinEEF2K protein, humanElongation Factor 2 KinasePeptide Elongation FactorsPeptidesRecombinant Proteins

Identifiers

PMID27499441
PMCPMC5014583
OpenAlexW2478288995

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.