Evidence map›Paper›PMID 27497445›Full record

ArticlePlant & cell physiology2016

Synergistic Activation of RD29A Via Integration of Salinity Stress and Abscisic Acid in Arabidopsis thaliana.

Sang Y Lee, Neville J Boon, Alex A R Webb, Reiko J Tanaka

Open access · bronzeAbstract read
In one paragraph

Article in Plant & cell physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
10.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 48 citations in OpenAlex.

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  16. Overexpression of thePlant signaling & behavior · 2019
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  17. Article
  18. PsCor413pm2, a Plasma Membrane-Localized, Cold-Regulated Protein fromInternational journal of molecular sciences · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Sang Y LeeDepartment of Bioengineering, Imperial College London, London SW7 2AZ, UK.
Neville J BoonDepartment of Bioengineering, Imperial College London, London SW7 2AZ, UK.
Alex A R WebbDepartment of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK.
Reiko J TanakaDepartment of Bioengineering, Imperial College London, London SW7 2AZ, UK r.tanaka@imperial.ac.uk.
Imperial College London · GBUniversity of Cambridge · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants perceive information from the surroundings and elicit appropriate molecular responses. How plants dynamically respond to combinations of external inputs is yet to be revealed, despite the detailed current knowledge of intracellular signaling pathways. We measured dynamics of Response-to-Dehydration 29A (RD29A) expression induced by single or combined NaCl and ABA treatments in Arabidopsis thaliana. RD29A expression in response to a combination of NaCl and ABA leads to unique dynamic behavior that cannot be explained by the sum of responses to individual NaCl and ABA. To explore the potential mechanisms responsible for the observed synergistic response, we developed a mathematical model of the DREB2 and AREB pathways based on existing knowledge, where NaCl and ABA act as the cognate inputs, respectively, and examined various system structures with cross-input modulation, where non-cognate input affects expression of the genes involved in adjacent signaling pathways. The results from the analysis of system structures, combined with the insights from microarray expression profiles and model-guided experiments, predicted that synergistic activation of RD29A originates from enhancement of DREB2 activity by ABA. Our analysis of RD29A expression profiles demonstrates that a simple mathematical model can be used to extract information from temporal dynamics induced by combinatorial stimuli and produce experimentally testable hypotheses.

Indexed as

SalinityAbscisic AcidArabidopsisArabidopsis ProteinsComputer SimulationGene Expression ProfilingGene Expression Regulation, PlantModels, BiologicalOligonucleotide Array Sequence AnalysisReproducibility of ResultsSodium ChlorideStress, PhysiologicalAbscisic AcidArabidopsis ProteinsRD29a protein, ArabidopsisSodium ChlorideCombined stressGene expression dynamicsMathematical modelingPlant abiotic stressesSignaling cross-talk

Identifiers

PMID27497445
PMCPMC5434669
OpenAlexW2481233606

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.