Evidence map›Paper›PMID 27497316›Full record

ArticleGenome biology and evolution2016

The Molecular Chaperone DnaK Is a Source of Mutational Robustness.

José Aguilar-Rodríguez, Beatriz Sabater-Muñoz, Roser Montagud-Martínez, Víctor Berlanga, David Alvarez-Ponce, Andreas Wagner, Mario A Fares

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
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  5. Article
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  7. Article
  8. Review
  9. Selection of Multi-Drug Targets against Drug-ResistantInternational journal of molecular sciences · 2023
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. The Hsp70-Chaperone Machines in Bacteria.Frontiers in molecular biosciences · 2021
    Review
  19. Article
  20. Contact Effect of aAntibiotics (Basel, Switzerland) · 2020
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 4 countries.

José Aguilar-RodríguezDepartment of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Beatriz Sabater-MuñozDepartment of Abiotic Stress, Instituto de Biología Molecular y Celular de Plantas (CSIC-UPV), Valencia, Spain Department of Genetics, Smurfit Institute of Genetics, University of Dublin Trinity College Dublin, Dublin, Ireland.
Roser Montagud-MartínezDepartment of Abiotic Stress, Instituto de Biología Molecular y Celular de Plantas (CSIC-UPV), Valencia, Spain.
Víctor BerlangaDepartment of Abiotic Stress, Instituto de Biología Molecular y Celular de Plantas (CSIC-UPV), Valencia, Spain.
David Alvarez-PonceDepartment of Biology, University of Nevada, Reno, Reno, Nevada, USA.
Andreas WagnerDepartment of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland Swiss Institute of Bioinformatics, Lausanne, Switzerland Santa Fe Institute, Santa Fe, New Mexico, USA andreas.wagner@ieu.uzh.ch mfares@ibmcp.upv.es faresm@tcd.ie.
Mario A FaresDepartment of Abiotic Stress, Instituto de Biología Molecular y Celular de Plantas (CSIC-UPV), Valencia, Spain Department of Genetics, Smurfit Institute of Genetics, University of Dublin Trinity College Dublin, Dublin, Ireland andreas.wagner@ieu.uzh.ch mfares@ibmcp.upv.es faresm@tcd.ie.
Instituto de Biología Molecular y Celular de Plantas · ESSIB Swiss Institute of Bioinformatics · CHTrinity College Dublin · IEUniversity of Nevada, Reno · USUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular chaperones, also known as heat-shock proteins, refold misfolded proteins and help other proteins reach their native conformation. Thanks to these abilities, some chaperones, such as the Hsp90 protein or the chaperonin GroEL, can buffer the deleterious phenotypic effects of mutations that alter protein structure and function. Hsp70 chaperones use a chaperoning mechanism different from that of Hsp90 and GroEL, and it is not known whether they can also buffer mutations. Here, we show that they can. To this end, we performed a mutation accumulation experiment in Escherichia coli, followed by whole-genome resequencing. Overexpression of the Hsp70 chaperone DnaK helps cells cope with mutational load and completely avoid the extinctions we observe in lineages evolving without chaperone overproduction. Additionally, our sequence data show that DnaK overexpression increases mutational robustness, the tolerance of its clients to nonsynonymous nucleotide substitutions. We also show that this elevated mutational buffering translates into differences in evolutionary rates on intermediate and long evolutionary time scales. Specifically, we studied the evolutionary rates of DnaK clients using the genomes of E. coli, Salmonella enterica, and 83 other gamma-proteobacteria. We find that clients that interact strongly with DnaK evolve faster than weakly interacting clients. Our results imply that all three major chaperone classes can buffer mutations and affect protein evolution. They illustrate how an individual protein like a chaperone can have a disproportionate effect on the evolution of a proteome.

Indexed as

Mutation RateEscherichia coliEscherichia coli ProteinsHSP70 Heat-Shock ProteinsPoint MutationdnaK protein, E coliEscherichia coli ProteinsHSP70 Heat-Shock ProteinsDnaKEscherichia coliexperimental evolutionmolecular chaperonesmutational robustnessprotein evolution

Identifiers

PMID27497316
PMCPMC5630943
OpenAlexW2481787499

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.