Evidence map›Paper›PMID 27495241›Full record

ArticleFEMS microbiology ecology2016

Patterns of bacterial biodiversity in the glacial meltwater streams of the McMurdo Dry Valleys, Antarctica.

David J Van Horn, Caitlin R Wolf, Daniel R Colman, Xiaoben Jiang, Tyler J Kohler, Diane M McKnight, Lee F Stanish, Terrill Yazzie, Cristina D Takacs-Vesbach

Abstract read
In one paragraph

Article in FEMS microbiology ecology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Ice-Binding Proteins Associated with an Antarctic Cyanobacterium,Applied and environmental microbiology · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

David J Van HornDepartment of Biology, University of New Mexico MSCO3 2020, 1 UNM, Albuquerque, NM 87131, USA.
Caitlin R WolfDepartment of Biology, University of New Mexico MSCO3 2020, 1 UNM, Albuquerque, NM 87131, USA.
Daniel R ColmanDepartment of Biology, University of New Mexico MSCO3 2020, 1 UNM, Albuquerque, NM 87131, USA.
Xiaoben JiangDepartment of Biology, University of New Mexico MSCO3 2020, 1 UNM, Albuquerque, NM 87131, USA.
Tyler J KohlerFaculty of Science, Department of Ecology, Charles University in Prague, Viničná 7, 12844 Prague 2, Prague, Czech Republic.
Diane M McKnightInstitute of Arctic and Alpine Research, University of Colorado, 1560 30th Street, Boulder, CO 80303, USA.
Lee F StanishNational Ecological Observatory Network, 1685 38th Street, Boulder, CO, 80301.
Terrill YazzieDepartment of Biology, University of New Mexico MSCO3 2020, 1 UNM, Albuquerque, NM 87131, USA.
Cristina D Takacs-VesbachDepartment of Biology, University of New Mexico MSCO3 2020, 1 UNM, Albuquerque, NM 87131, USA cvesbach@unm.edu.

Funding

UNM PREP (Post-baccalaureate Research Education ProgramR25GM075149 · NIGMS · UNIVERSITY OF NEW MEXICO · PI Kelly Miller · 2005 to 2026
$7.3M
Pilot Project ProgramP30GM110907 · NIGMS · UNIVERSITY OF NEW MEXICO · PI LOKER, ERIC SAMUEL · 2014 to 2018
$5.4M
The Flybase Diversity Action PlanR25HG007630 · NHGRI · HARVARD UNIVERSITY · PI PERRIMON, NORBERT · 2015 to 2018
$923k
NHGRI NIH HHS R25 HG007630NIGMS NIH HHS P30 GM110907NIGMS NIH HHS R25 GM075149
6 · The paper itself

Abstract

Microbial consortia dominate glacial meltwater streams from polar regions, including the McMurdo Dry Valleys (MDV), where they thrive under physiologically stressful conditions. In this study, we examined microbial mat types and sediments found in 12 hydrologically diverse streams to describe the community diversity and composition within and across sites. Sequencing of the 16S rRNA gene from 129 samples revealed ∼24 000 operational taxonomic units (<97% DNA similarity), making streams the most biodiverse habitat in the MDV. Principal coordinate analyses revealed significant but weak clustering by mat type across all streams (ANOSIM R-statistic = 0.28) but stronger clustering within streams (ANOSIM R-statistic from 0.28 to 0.94). Significant relationships (P < 0.05) were found between bacterial diversity and mat ash-free dry mass, suggesting that diversity is related to the hydrologic regimes of the various streams, which are predictive of mat biomass. However, correlations between stream chemistry and community members were weak, possibly reflecting the importance of internal processes and hydrologic conditions. Collectively, these results suggest that localized conditions dictate bacterial community composition of the same mat types and sediments from different streams, and while MDV streams are hotspots of biodiversity in an otherwise depauperate landscape, controls on community structure are complex and site specific.

Indexed as

BiodiversityMicrobial ConsortiaAntarctic RegionsBacteriaDNA, BacterialEcosystemRiversRNA, Ribosomal, 16SDNA, BacterialRNA, Ribosomal, 16S16S rRNA genecommunity structurecyanobacteriadiversitymicrobial matspolar region

Identifiers

PMID27495241
PMCPMC5975864

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.