Evidence map›Paper›PMID 27495179›Full record

ArticleMolecular genetics and genomics : MGG2016

The starch-bound alpha-amylase/trypsin-inhibitors in Avena.

Laura Gazza, Gloria Gazzelloni, Federica Taddei, Arianna Latini, Vera Muccilli, Michela Alfieri, Salvatore Conti, Rita Redaelli, Norberto E Pogna

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular genetics and genomics : MGG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Laura GazzaConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA-QCE), Via Manziana 30, 00189, Rome, Italy. laura.gazza@crea.gov.it.ORCID http://orcid.org/0000-0003-2772-3199
Gloria GazzelloniConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA-QCE), Via Manziana 30, 00189, Rome, Italy.
Federica TaddeiConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA-QCE), Via Manziana 30, 00189, Rome, Italy.
Arianna LatiniConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA-QCE), Via Manziana 30, 00189, Rome, Italy.
Vera MuccilliDepartment of Chemical Sciences, University of Catania, Via Andrea Doria 6, Catania, Italy.
Michela AlfieriConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA-MAC), Via Stezzano 24, Bergamo, Italy.
Salvatore ContiConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA-QCE), Via Manziana 30, 00189, Rome, Italy.
Rita RedaelliConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA-MAC), Via Stezzano 24, Bergamo, Italy.
Norberto E PognaConsiglio per la ricerca in agricoltura e l'analisi dell'economia agraria (CREA-QCE), Via Manziana 30, 00189, Rome, Italy.
Consiglio per la ricerca in agricoltura e l’analisi dell’economia agraria · ITForestry Research Centre · ITNational Agency for New Technologies, Energy and Sustainable Economic Development · ITUniversity of Catania · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oat kernels exhibit an extra-soft texture, a trait recently demonstrated to be largely modulated by starch-bound tryptophan-rich 2S proteins, the vromindolines. In this study, fractionation by two-dimensional electrophoresis of starch-bound proteins in 25 oat (Avena sativa) cultivars and 11 diploid or tetraploid Avena species revealed novel 2S proteins called Avena α-amylase/trypsin-inhibitors (AATI) because of their sequence similarity with wheat α-amylase/trypsin inhibitors. Thirty-seven AATI polypeptides, about 14 kDa in size, were split into three families named AATI-1, AATI-2, and AATI-3 with different primary structures and isoelectric points. AATI-1 and AATI-2 proteins showed 55.5-60.0 % sequence similarity with wheat α-amylase inhibitors CM1, CM2, and CM16, which have been found to cause innate immunity responses in celiac disease and non-celiac gluten sensitivity. Diploid A-genome and tetraploid AC-genome oat species possess three and five genes encoding for the AATI proteins, respectively, whereas hexaploid A. sativa exhibits 12 genes dispersed over the A-, C-, and D-genomes. Some AATI proteins expressed in hexaploid oats were assigned to the A-genome based on similarity to their counterparts in diploid species, contributing to further clarify the genetic origin of hexaploid oats. Moreover, AATI may interact with starch-bound vromindolines in determining the extra-soft texture of oat kernels and, due to their balanced amino acid compositions, may contribute to the biological value of oat proteins in a positive manner.

Indexed as

alpha-AmylasesAvenaDiploidyGenome, PlantPlant ProteinsPolyploidySequence Analysis, DNASequence Homology, Nucleic AcidStarchTrypsin Inhibitorsalpha-AmylasesPlant ProteinsStarchTrypsin InhibitorsAvenaKernel textureOat immunogenicityStarch-bound proteinsα-Amylase/trypsin-inhibitors

Identifiers

PMID27495179
OpenAlexW2503084399

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.