Evidence map›Paper›PMID 27493656›Full record

ArticleFrontiers in plant science2016

Sm-Like Protein-Mediated RNA Metabolism Is Required for Heat Stress Tolerance in Arabidopsis.

Masanori Okamoto, Akihiro Matsui, Maho Tanaka, Taeko Morosawa, Junko Ishida, Kei Iida, Yoshiki Mochizuki, Tetsuro Toyoda, Motoaki Seki

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Abiotic stress responses in plants.Nature reviews. Genetics · 2022
    Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Review
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Masanori OkamotoArid Land Research Center, Tottori UniversityHamasaka, Japan; RIKEN Center for Sustainable Resource ScienceYokohama, Japan; PRESTO, Japan Science and Technology AgencyKawaguchi, Japan.
Akihiro MatsuiRIKEN Center for Sustainable Resource Science Yokohama, Japan.
Maho TanakaRIKEN Center for Sustainable Resource Science Yokohama, Japan.
Taeko MorosawaRIKEN Center for Sustainable Resource Science Yokohama, Japan.
Junko IshidaRIKEN Center for Sustainable Resource Science Yokohama, Japan.
Kei IidaGraduate School of Medicine, Kyoto University Kyoto, Japan.
Yoshiki MochizukiRIKEN Center for Integrative Medical Sciences Yokohama, Japan.
Tetsuro ToyodaRIKEN Advanced Center for Computing and Communication Wako, Japan.
Motoaki SekiRIKEN Center for Sustainable Resource ScienceYokohama, Japan; Kihara Institute for Biological Research, Yokohama City UniversityYokohama, Japan; CREST, Japan Science and Technology AgencyKawaguchi, Japan.
RIKEN Center for Sustainable Resource Science · JPJapan Science and Technology Agency · JPKihara Institute for Biological Research · JPKyoto University · JPRIKEN Center for Integrative Medical Sciences · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sm-like proteins play multiple functions in RNA metabolism, which is essential for biological processes such as stress responses in eukaryotes. The Arabidopsis thaliana sad1 mutant has a mutation of sm-like protein 5 (LSM5) and shows impaired drought and salt stress tolerances. The lsm5/sad1 mutant also showed hypersensitivity to heat stress. GFP-fused LSM5/SAD1 was localized in the nucleus under optimal growth conditions. After heat stress treatment, GFP-fused LSM5/SAD1 fluorescence was also observed as small cytoplasmic dots, in addition to nuclear localization. Whole genome transcriptome analysis revealed that many genes in Arabidopsis were drastically changed in response to heat stress. More heat-responsive genes were highly expressed in lsm5/sad1 mutant at both 2 and 6 h after heat stress treatment. Additionally, intron-retained and capped transcripts accumulated in the lsm5/sad1 mutant after heat stress treatment. In this study, we also identified non-Arabidopsis Genome Initiative transcripts that were expressed from unannotated regions. Most of these transcripts were antisense transcripts, and many capped non-AGI transcripts accumulated in the lsm5/sad1 mutant during heat stress treatment. These results indicated that LSM5/SAD1 functions to degrade aberrant transcripts through appropriate mRNA splicing and decapping, and precise RNA metabolic machinery is required for heat stress tolerance.

Indexed as

aberrant transcriptionsantisense RNAArabidopsisarid regionheat stressnon-coding RNARNA metabolismSm-like protein

Identifiers

PMID27493656
PMCPMC4954817
OpenAlexW2498864135

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.