Evidence map›Paper›PMID 27493217›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Gram-negative trimeric porins have specific LPS binding sites that are essential for porin biogenesis.

Wanatchaporn Arunmanee, Monisha Pathania, Alexandra S Solovyova, Anton P Le Brun, Helen Ridley, Arnaud Baslé, Bert van den Berg, Jeremy H Lakey

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
13.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 124 citations in OpenAlex.

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  14. Faster but Not Sweeter: A Model ofJournal of chemical theory and computation · 2024
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10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Wanatchaporn ArunmaneeInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom;
Monisha PathaniaInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom;
Alexandra S SolovyovaInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom; Newcastle University Protein and Proteome Analysis, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom;
Anton P Le BrunNational Deuteration Facility, Bragg Institute, Australian Nuclear Science and Technology Organisation, Kirrawee DC, NSW 2232, Australia.
Helen RidleyInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom;
Arnaud BasléInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom;
Bert van den BergInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom; bert.van-den-berg@newcastle.ac.uk jeremy.lakey@ncl.ac.uk.
Jeremy H LakeyInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4HH, United Kingdom; bert.van-den-berg@newcastle.ac.uk jeremy.lakey@ncl.ac.uk.
Newcastle University · GBAustralian Nuclear Science and Technology Organisation · AU

Funding

Wellcome Trust 093581
6 · The paper itself

Abstract

The outer membrane (OM) of gram-negative bacteria is an unusual asymmetric bilayer with an external monolayer of lipopolysaccharide (LPS) and an inner layer of phospholipids. The LPS layer is rigid and stabilized by divalent cation cross-links between phosphate groups on the core oligosaccharide regions. This means that the OM is robust and highly impermeable to toxins and antibiotics. During their biogenesis, OM proteins (OMPs), which function as transporters and receptors, must integrate into this ordered monolayer while preserving its impermeability. Here we reveal the specific interactions between the trimeric porins of Enterobacteriaceae and LPS. Isolated porins form complexes with variable numbers of LPS molecules, which are stabilized by calcium ions. In earlier studies, two high-affinity sites were predicted to contain groups of positively charged side chains. Mutation of these residues led to the loss of LPS binding and, in one site, also prevented trimerization of the porin, explaining the previously observed effect of LPS mutants on porin folding. The high-resolution X-ray crystal structure of a trimeric porin-LPS complex not only helps to explain the mutagenesis results but also reveals more complex, subtle porin-LPS interactions and a bridging calcium ion.

Indexed as

Amino Acid SubstitutionAmino Acid MotifsBinding SitesCalciumCations, DivalentCrystallography, X-RayEscherichia coliGene ExpressionLipopolysaccharidesModels, MolecularMutationPorinsProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein FoldingCalciumCations, DivalentLipopolysaccharidesOmpC proteinOmpF proteinPorinsgram-negative bacterialipopolysaccharideouter membraneporinX-ray crystal structure

Identifiers

PMID27493217
PMCPMC5003275
OpenAlexW2493675177

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.