ArticleNucleic acids research2017
SoyNet: a database of co-functional networks for soybean Glycine max.
Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.
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Who cites it
39 citing papers in PubMed.
- A modular UDP-glycosyltransferase and cytochrome P450 system for soyasaponin C-22 modification.The Plant journal : for cell and molecular biology · 2026Article
- Pan-Transcriptome Analyses of Multiple Tissues and Growth Stages Create Expression Atlases for the SilkwormAnimals : an open access journal from MDPI · 2026Article
- First draft genome and genetic diversity analysis of the economically important and vulnerable tree species Saraca asoca (Roxb.) W.J. de Wilde.Journal of genetics · 2026Article
- A multi-layered systems biology framework reveals dual-phased regulators and hormonal crosstalk underlying soybean cold tolerance.Plant cell reports · 2025Article
- Using Structural Equation Models to Interpret Genome-Wide Association Studies for Morphological and Productive Traits in Soybean [Plants (Basel, Switzerland) · 2025Article
- CYP71D8 and CYP82A2 catalyze the last committed step in biosynthesis of glyceollin isomers in soybean.Plant biotechnology (Tokyo, Japan) · 2025Article
- Quality traits drive the enrichment of Massilia in the rhizosphere to improve soybean oil content.Microbiome · 2024Article
- Characterization of the Regulatory Network under Waterlogging Stress in Soybean Roots via Transcriptome Analysis.Plants (Basel, Switzerland) · 2024Article
- Recent advances in exploring transcriptional regulatory landscape of crops.Frontiers in plant science · 2024Review
- Genome-wide identification and functional analysis of mRNA mFrontiers in plant science · 2024Article
- Twenty years of mining salt tolerance genes in soybean.Molecular breeding : new strategies in plant improvement · 2023Article
- Integrative pathway and network analysis provide insights on flooding-tolerance genes in soybean.Scientific reports · 2023Article
- Genome-Wide Characterization and Expression Analysis of GeBP Family Genes in Soybean.Plants (Basel, Switzerland) · 2022Article
- Genetic and Genomic Resources for Soybean Breeding Research.Plants (Basel, Switzerland) · 2022Review
- Progress in soybean functional genomics over the past decade.Plant biotechnology journal · 2022Review
- An advanced systems biology framework of feature engineering for cold tolerance genes discovery from integrated omics and non-omics data in soybean.Frontiers in plant science · 2022Article
- Identification of GOLDEN2-like transcription factor genes in soybeans and their role in regulating plant development and metal ion stresses.Frontiers in plant science · 2022Article
- A Multi-Level Iterative Bi-Clustering Method for Discovering miRNA Co-regulation Network of Abiotic Stress Tolerance in Soybeans.Frontiers in plant science · 2022Article
- Large-Scale Integrative Analysis of Soybean Transcriptome Using an Unsupervised Autoencoder Model.Frontiers in plant science · 2022Article
- Transcriptome profiling reveals the spatial-temporal dynamics of gene expression essential for soybean seed development.BMC genomics · 2021Article
Corrections and comments
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Authors and funding
3 authors.
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Abstract
Soybean (Glycine max) is a legume crop with substantial economic value, providing a source of oil and protein for humans and livestock. More than 50% of edible oils consumed globally are derived from this crop. Soybean plants are also important for soil fertility, as they fix atmospheric nitrogen by symbiosis with microorganisms. The latest soybean genome annotation (version 2.0) lists 56 044 coding genes, yet their functional contributions to crop traits remain mostly unknown. Co-functional networks have proven useful for identifying genes that are involved in a particular pathway or phenotype with various network algorithms. Here, we present SoyNet (available at www.inetbio.org/soynet), a database of co-functional networks for G. max and a companion web server for network-based functional predictions. SoyNet maps 1 940 284 co-functional links between 40 812 soybean genes (72.8% of the coding genome), which were inferred from 21 distinct types of genomics data including 734 microarrays and 290 RNA-seq samples from soybean. SoyNet provides a new route to functional investigation of the soybean genome, elucidating genes and pathways of agricultural importance.
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