Evidence map›Paper›PMID 27491006›Full record

ArticleEnvironmental microbiology2016

A low frequency persistent reservoir of a genomic island in a pathogen population ensures island survival and improves pathogen fitness in a susceptible host.

Helen C Neale, Robert Laister, Joseph Payne, Gail Preston, Robert W Jackson, Dawn L Arnold

Abstract read
In one paragraph

Article in Environmental microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Molecular Evolution ofFrontiers in plant science · 2019
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Helen C NealeCentre for Research in Bioscience, Faculty of Health and Applied Sciences, The University of the West of England, Frenchay Campus, Bristol, BS16 1QY, UK.
Robert LaisterDepartment of Engineering Design and Mathematics, The University of the West of England, Frenchay Campus, Bristol, BS16 1QY, UK.
Joseph PayneCentre for Research in Bioscience, Faculty of Health and Applied Sciences, The University of the West of England, Frenchay Campus, Bristol, BS16 1QY, UK.
Gail PrestonDepartment of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK.
Robert W JacksonSchool of Biological Sciences, University of Reading, Reading, RG6 6UR, UK.
Dawn L ArnoldCentre for Research in Bioscience, Faculty of Health and Applied Sciences, The University of the West of England, Frenchay Campus, Bristol, BS16 1QY, UK.

Funding

Biotechnology and Biological Sciences Research Council BB/J014796/1Biotechnology and Biological Sciences Research Council BB/J015350/1Biotechnology and Biological Sciences Research Council BB/J016012/1
6 · The paper itself

Abstract

The co-evolution of bacterial plant pathogens and their hosts is a complex and dynamic process. Host resistance imposes stress on invading pathogens that can lead to changes in the bacterial genome enabling the pathogen to escape host resistance. We have observed this phenomenon with the plant pathogen Pseudomonas syringae pv. phaseolicola where isolates that have lost the genomic island PPHGI-1 carrying the effector gene avrPphB from its chromosome are infective against previously resistant plant hosts. However, we have never observed island extinction from the pathogen population within a host suggesting the island is maintained. Here, we present a mathematical model which predicts different possible fates for the island in the population; one outcome indicated that PPHGI-1 would be maintained at low frequency in the population long term, if it confers a fitness benefit. We empirically tested this prediction and determined that PPHGI-1 frequency in the bacterial population drops to a low but consistently detectable level during host resistance. Once PPHGI-1-carrying cells encounter a susceptible host, they rapidly increase in the population in a negative frequency-dependent manner. Importantly, our data show that mobile genetic elements can persist within the bacterial population and increase in frequency under favourable conditions.

Indexed as

Genomic IslandsBacterial ProteinsPlant DiseasesPlantsPseudomonas syringaeBacterial Proteins

Identifiers

PMID27491006
PMCPMC5573919

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.