Evidence map›Paper›PMID 27490645›Full record

SynthesisJournal of thrombosis and haemostasis : JTH2016

Single nucleotide polymorphisms in an intergenic chromosome 2q region associated with tissue factor pathway inhibitor plasma levels and venous thromboembolism.

J Dennis, V Truong, D Aïssi, A Medina-Rivera, S Blankenberg, M Germain, M Lemire, L Antounians, M Civelek, R Schnabel and 5 more

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in Journal of thrombosis and haemostasis : JTH, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 10 institutions in 5 countries.

J DennisDalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada.
V TruongDalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada.
D AïssiSorbonne Universités, UPMC Univ. Paris 06, Paris, France.
A Medina-RiveraLaboratorio Internacional de Investigación sobre el Genoma Humano, Universidad Nacional Autónoma de México, Santiago de Querétaro, Mexico.
S BlankenbergDepartment of General and Interventional Cardiology, University of Hamburg, Hamburg, Germany.
M GermainSorbonne Universités, UPMC Univ. Paris 06, Paris, France.
M LemireOntario Institute for Cancer Research, Toronto, Ontario, Canada.
L AntouniansGenetics and Genome Biology, Hospital for Sick Children, Toronto, Ontario, Canada.
M CivelekCenter for Public Health Genomics, Department of Biomedical Engineering, University of Virginia, Charlottesville, VA, USA.
R SchnabelDepartment of General and Interventional Cardiology, University of Hamburg, Hamburg, Germany.
P WellsOttawa Hospital Research Institute, Ottawa, Ontario, Canada.
M D WilsonGenetics and Genome Biology, Hospital for Sick Children, Toronto, Ontario, Canada.
P-E MorangeINSERM, UMR_S 1062, Marseille, France.
D-A TrégouëtSorbonne Universités, UPMC Univ. Paris 06, Paris, France.
F GagnonDalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada. france.gagnon@utoronto.ca.
University of Toronto · CAFondation pour l’innovation en Cadiométabolisme et Nutrition · FRHospital for Sick Children · CAUniversität Hamburg · DEAix-Marseille Université · FROntario Institute for Cancer Research · CAOttawa Hospital · CAPublic Health Ontario · CASorbonne Université · FRUniversity of Virginia · US

Funding

Systems genetics analysis of cardiometabolic trait loci in humans R00HL121172 · NHLBI · UNIVERSITY OF VIRGINIA · PI CIVELEK, METE · 2016 to 2018
$741k
Systems genetics analysis of cardiometabolic trait loci in humans K99HL121172 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CIVELEK, METE · 2014 to 2015
$247k
CIHR MOP 86466NHLBI NIH HHS K99 HL121172NHLBI NIH HHS R00 HL121172
6 · The paper itself

Abstract

Essentials Tissue factor pathway inhibitor (TFPI) regulates the blood coagulation cascade. We replicated previously reported linkage of TFPI plasma levels to the chromosome 2q region. The putative causal locus, rs62187992, was associated with TFPI plasma levels and thrombosis. rs62187992 was marginally associated with TFPI expression in human aortic endothelial cells. Click to hear Ann Gil's presentation on new insights into thrombin activatable fibrinolysis inhibitor SUMMARY: Background Tissue factor pathway inhibitor (TFPI) regulates fibrin clot formation, and low TFPI plasma levels increase the risk of arterial thromboembolism and venous thromboembolism (VTE). TFPI plasma levels are also heritable, and a previous linkage scan implicated the chromosome 2q region, but no specific genes. Objectives To replicate the finding of the linkage region in an independent sample, and to identify the causal locus. Methods We first performed a linkage analysis of microsatellite markers and TFPI plasma levels in 251 individuals from the F5L Family Study, and replicated the finding of the linkage peak on chromosome 2q (LOD = 3.06). We next defined a follow-up region that included 112 603 single nucleotide polymorphisms (SNPs) under the linkage peak, and meta-analyzed associations between these SNPs and TFPI plasma levels across the F5L Family Study and the Marseille Thrombosis Association (MARTHA) Study, a study of 1033 unrelated VTE patients. SNPs with false discovery rate q-values of < 0.10 were tested for association with TFPI plasma levels in 892 patients with coronary artery disease in the AtheroGene Study. Results and Conclusions One SNP, rs62187992, was associated with TFPI plasma levels in all three samples (β = + 0.14 and P = 4.23 × 10

Indexed as

Blood CoagulationPolymorphism, Single NucleotideAdolescentAdultAgedAortaChildChromosome MappingChromosomes, Human, Pair 2Coronary Artery DiseaseEndothelial CellsFactor VFalse Positive ReactionsFemaleGenetic LinkageHomozygoteFactor Vfactor V Leidenlipoprotein-associated coagulation inhibitorLipoproteinsblood coagulationgenetic association studiesgenetic linkagethrombosistissue factor pathway inhibitor

Identifiers

PMID27490645
PMCPMC6544906
OpenAlexW2518823129

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.