Evidence map›Paper›PMID 27490484›Full record

ArticleeLife2016

The selectivity of the Na(+)/K(+)-pump is controlled by binding site protonation and self-correcting occlusion.

Huan Rui, Pablo Artigas, Benoît Roux

Abstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Active conformations of neuronal NaNature communications · 2026
    Article
  2. Exploring the Mechanism of NabioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Multistate Kinetic Model of the Sodium-Potassium ATPase.The journal of physical chemistry. B · 2025
    Article
  7. Article
  8. Article
  9. Living Cell as a Self-Synchronized Chemical Reactor.The journal of physical chemistry letters · 2024
    Review
  10. Article
  11. Specific protonation of acidic residues confers KThe Journal of biological chemistry · 2024
    Article
  12. A Na pump with reduced stoichiometry is up-regulated by brine shrimp in extreme salinities.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. The NaBiophysical reviews · 2023
    Review
  14. Structure and function of HNature communications · 2022
    Article
  15. Article
  16. Stable potassium isotopes (Frontiers in physiology · 2022
    Article
  17. FXYD proteins and sodium pump regulatory mechanisms.The Journal of general physiology · 2021
    Review
  18. NaMolecules (Basel, Switzerland) · 2021
    Review
  19. Evolution of Plant NaPlants (Basel, Switzerland) · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Huan RuiDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, United States.ORCID 0000-0002-6459-9871
Pablo ArtigasDepartment of Cell Physiology and Molecular Biophysics, Texas Tech University Health Sciences Center, Lubbock, United States.
Benoît RouxDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, United States.ORCID 0000-0002-5254-2712

Funding

Synthetic Antigen Binder CoreU54GM087519 · NIGMS · UNIVERSITY OF CHICAGO · PI PEROZO, EDUARDO A · 2010 to 2017
$31.9M
TrainingP41GM103712 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FAEDER, JAMES · 2012 to 2021
$16.3M
Physiologically relevant energetic interactions within the Na/K PumpR15NS081570 · NINDS · TEXAS TECH UNIVERSITY HEALTH SCIS CENTER · PI ARTIGAS, PABLO · 2013 to 2013
$453k
NIGMS NIH HHS P41 GM103712NIGMS NIH HHS U54 GM087519NINDS NIH HHS R15 NS081570
6 · The paper itself

Abstract

The Na(+)/K(+)-pump maintains the physiological K(+) and Na(+) electrochemical gradients across the cell membrane. It operates via an 'alternating-access' mechanism, making iterative transitions between inward-facing (E1) and outward-facing (E2) conformations. Although the general features of the transport cycle are known, the detailed physicochemical factors governing the binding site selectivity remain mysterious. Free energy molecular dynamics simulations show that the ion binding sites switch their binding specificity in E1 and E2. This is accompanied by small structural arrangements and changes in protonation states of the coordinating residues. Additional computations on structural models of the intermediate states along the conformational transition pathway reveal that the free energy barrier toward the occlusion step is considerably increased when the wrong type of ion is loaded into the binding pocket, prohibiting the pump cycle from proceeding forward. This self-correcting mechanism strengthens the overall transport selectivity and protects the stoichiometry of the pump cycle.

Indexed as

Binding SitesModels, MolecularMolecular Dynamics SimulationPotassiumProtein ConformationSodiumSodium-Potassium-Exchanging ATPaseSubstrate SpecificityPotassiumSodiumSodium-Potassium-Exchanging ATPasebiophysicscomputational biologyconformational transitionsfree energymolecular dynamicssimulationsstructural biologysystems biology

Identifiers

PMID27490484
PMCPMC5026471

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.