Evidence map›Paper›PMID 27490177›Full record

ArticlePloS one2016

Human Serum-Specific Activation of Alternative Sigma Factors, the Stress Responders in Aggregatibacter actinomycetemcomitans.

Gaoyan Tang-Siegel, Roger Bumgarner, Teresa Ruiz, Weerayuth Kittichotirat, Weizhen Chen, Casey Chen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Outer membrane vesicle-mediated serum protection inJournal of oral microbiology · 2020
    Article
  4. Role of OmpA1 and OmpA2 inJournal of oral microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Gaoyan Tang-SiegelDepartment of Molecular Physiology and Biophysics, College of Medicine, University of Vermont, Burlington, VT, United States of America.
Roger BumgarnerDepartment of Microbiology, University of Washington, Seattle, WA, United States of America.
Teresa RuizDepartment of Molecular Physiology and Biophysics, College of Medicine, University of Vermont, Burlington, VT, United States of America.
Weerayuth KittichotiratSystems Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Bangkok, Thailand.
Weizhen ChenOstrow School of Dentistry, University of Southern California, Los Angeles, CA, United States of America.
Casey ChenOstrow School of Dentistry, University of Southern California, Los Angeles, CA, United States of America.
University of Southern California · USUniversity of Vermont · USKing Mongkut's University of Technology Thonburi · THUniversity of Washington · US

Funding

Novel clone-specific virulence determinants of A. actinomycetemcomitansR01DE012212 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHEN, CASEY · 1999 to 2016
$5.0M
Interactions of the oral pathogen, A. actinomycetemcomitans, with collagenR01DE024554 · NIDCR · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI MINTZ, KEITH PETER, RUIZ, TERESA · 2014 to 2018
$3.6M
DOCTORAL AND POST-DOCTORAL TRAINING IN CRANIOFACIAL BIOLOGYR90DE022528 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI PAINE, MICHAEL LANSDELL · 2011 to 2025
$1.3M
NIDCR NIH HHS R01 DE012212NIDCR NIH HHS R01 DE024554NIDCR NIH HHS R90 DE022528
6 · The paper itself

Abstract

Aggregatibacter actinomycetemcomitans, a known pathogen causing periodontal disease and infective endocarditis, is a survivor in the periodontal pocket and blood stream; both environments contain serum as a nutrient source. To screen for unknown virulence factors associated with this microorganism, A. actinomycetemcomitans was grown in serum-based media to simulate its in vivo environment. Different strains of A. actinomycetemcomitans showed distinct growth phenotypes only in the presence of human serum, and they were grouped into high- and low-responder groups. High-responders comprised mainly serotype c strains, and showed an unusual growth phenomenon, featuring a second, rapid increase in turbidity after 9-h incubation that reached a final optical density 2- to 7-fold higher than low-responders. Upon further investigation, the second increase in turbidity was not caused by cell multiplication, but by cell death. Whole transcriptomic analysis via RNA-seq identified 35 genes that were up-regulated by human serum, but not horse serum, in high-responders but not in low-responders, including prominently an alternative sigma factor rpoE (σE). A lacZ reporter construct driven by the 132-bp rpoE promoter sequence of A. actinomycetemcomitans responded dramatically to human serum within 90 min of incubation only when the construct was carried by a high responder strain. The rpoE promoter is 100% identical among high- and low-responder strains. Proteomic investigation showed potential interactions between human serum protein, e.g. apolipoprotein A1 (ApoA1) and A. actinomycetemcomitans. The data clearly indicated a different activation process for rpoE in high- versus low-responder strains. This differential human serum-specific activation of rpoE, a putative extra-cytoplasmic stress responder and global regulator, suggests distinct in vivo adaptations among different strains of A. actinomycetemcomitans.

Indexed as

Aggregatibacter actinomycetemcomitansApolipoprotein A-IBacterial ProteinsCulture MediaGene Expression ProfilingGenes, ReporterHumansMicroscopy, ConfocalMicroscopy, Electron, TransmissionPromoter Regions, GeneticProteomicsRNA, BacterialSequence Analysis, RNASerogroupSerumSigma FactorApolipoprotein A-IBacterial ProteinsCulture MediaRNA, BacterialSigma Factor

Identifiers

PMID27490177
PMCPMC4973924
OpenAlexW2491955272

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.