Evidence map›Paper›PMID 27489208›Full record

ArticleG3 (Bethesda, Md.)2016

Interallelic Transcriptional Enhancement as an in Vivo Measure of Transvection in Drosophila melanogaster.

Geoffrey P Noble, Patrick J Dolph, Surachai Supattapone

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Geoffrey P NobleDepartment of Biochemistry and Cell Biology, Geisel School of Medicine, Dartmouth College, Hanover, New Hampshire 03755 Department of Medicine, Geisel School of Medicine, Dartmouth College, Hanover, New Hampshire 03755.
Patrick J DolphDepartment of Biology, Dartmouth College, Hanover, New Hampshire 03755.
Surachai SupattaponeDepartment of Biochemistry and Cell Biology, Geisel School of Medicine, Dartmouth College, Hanover, New Hampshire 03755 Department of Medicine, Geisel School of Medicine, Dartmouth College, Hanover, New Hampshire 03755 supattpone@dartmouth.edu.
Dartmouth College · US

Funding

Drosophila Transgenic RNAi Resource ProjectR01GM084947 · NIGMS · HARVARD MEDICAL SCHOOL · PI PERRIMON, NORBERT · 2008 to 2019
$9.8M
Origin and Mechanism of Promiscuous Prion StrainsR01NS046478 · NINDS · DARTMOUTH COLLEGE · PI SUPATTAPONE, SURACHAI · 2004 to 2017
$5.0M
Long-Term Safety, Efficacy, and Mechanism of PERK Inhibition Therapy for Prion DiseaseR21NS095763 · NINDS · DARTMOUTH COLLEGE · PI SUPATTAPONE, SURACHAI · 2016 to 2017
$446k
NIGMS NIH HHS R01 GM084947NINDS NIH HHS R01 NS046478NINDS NIH HHS R21 NS095763
6 · The paper itself

Abstract

Transvection-pairing-dependent interallelic regulation resulting from enhancer action in trans-occurs throughout the Drosophila melanogaster genome, likely as a result of the extensive somatic homolog pairing seen in Dipteran species. Recent studies of transvection in Drosophila have demonstrated important qualitative differences between enhancer action in cis vs. in trans, as well as a modest synergistic effect of cis- and trans-acting enhancers on total tissue transcript levels at a given locus. In the present study, we identify a system in which cis- and trans-acting GAL4-UAS enhancer synergism has an unexpectedly large quantitative influence on gene expression, boosting total tissue transcript levels at least fourfold relative to those seen in the absence of transvection. We exploit this strong quantitative effect by using publicly available UAS-shRNA constructs from the TRiP library to assay candidate genes for transvection activity in vivo The results of the present study, which demonstrate that in trans activation by simple UAS enhancers can have large quantitative effects on gene expression in Drosophila, have important new implications for experimental design utilizing the GAL4-UAS system.

Indexed as

AllelesEpistasis, GeneticGene Expression RegulationTranscription, GeneticAnimalsAnimals, Genetically ModifiedDrosophila melanogasterEnhancer Elements, GeneticGene ExpressionGene Knockdown TechniquesPrion ProteinsRNA, Small InterferingTransgenesPrion ProteinsRNA, Small InterferingenhancerGAL4-UASsomatic pairingtransvection

Identifiers

PMID27489208
PMCPMC5068936
OpenAlexW2506385661

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.