Evidence map›Paper›PMID 27488925›Full record

ArticleProtoplasma2017

Expression analysis and promoter methylation under osmotic and salinity stress of TaGAPC1 in wheat (Triticum aestivum L).

Ying Fei, Yuanxia Xue, Peixiu Du, Shushen Yang, Xiping Deng

Abstract read
PubMed Publisher
In one paragraph

Article in Protoplasma, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Identification and expression profiling ofFrontiers in plant science · 2024
    Article
  9. Genome-Wide Analysis and Expression Profiling ofPlants (Basel, Switzerland) · 2023
    Article
  10. Review
  11. Review
  12. Promoter DNA hypermethylation ofJournal of advanced research · 2022
    Article
  13. Article
  14. Review
  15. ComprehensiveFrontiers in genetics · 2021
    Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ying FeiCollege of Life Sciences, Northwest A&F University, 712100, Yangling, Shaanxi, People's Republic of China.
Yuanxia XueCollege of Life Sciences, Northwest A&F University, 712100, Yangling, Shaanxi, People's Republic of China.
Peixiu DuCollege of Life Sciences, Northwest A&F University, 712100, Yangling, Shaanxi, People's Republic of China.
Shushen YangCollege of Life Sciences, Northwest A&F University, 712100, Yangling, Shaanxi, People's Republic of China. yangshushen2014@163.com.
Xiping DengInstitute of Soil and Water Conservation, Chinese Academy of Sciences, 712100, Yangling, Shaanxi, People's Republic of China. dengxp@ms.iswc.ac.cn.
Northwest A&F University · CNChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cytosolic glyceraldehyde-3-phosphate dehydrogenase (GAPC) catalyzes a key reaction in glycolysis and encoded by a multi-gene family which showed instability expression under abiotic stress. DNA methylation is an epigenetic modification that plays an important role in gene regulation in response to abiotic stress. The comprehension of DNA methylation at promoter region of TaGAPC1 can provide insights into the transcription regulation mechanisms of plant genes under abiotic stress. In this study, we cloned TaGAPC1 genes and its promoters from two wheat genomes, then investigated the expression patterns of TaGAPC1 under osmotic and salinity stress, and analyzed the promoter sequences. Moreover, the methylation patterns of promoters under stress were confirmed. Expression analysis indicated that TaGAPC1 was induced inordinately by stresses in two wheat genotypes with contrasting drought tolerance. Several stress-related cis-acting elements (MBS, DRE, GT1 and LTR et al.) were located in its promoters. Furthermore, the osmotic and salinity stress induced the demethylation of CG and CHG nucleotide in the promoter region of Changwu134. The methylation level of CHG and CHH in promoter of Zhengyin1 was always increased under stresses, and the CG contexts remained unchanged. The cytosine loci of stress-related cis-acting elements also showed different methylation changes in this process. These results provide insights into the relationship between promoter methylation and gene expression, promoting the function investigation of GAPC.

Indexed as

Gene Expression Regulation, PlantOsmosisPromoter Regions, GeneticSalinityAmino Acid SequenceArabidopsisBase SequenceDNA MethylationGene Expression ProfilingGenes, PlantPhylogenyPlant ProteinsRNA, MessengerSequence AlignmentSequence Analysis, DNAStress, PhysiologicalPlant ProteinsRNA, MessengerCis-elementsDNA methylationGene expressionPromoterStressWheat

Identifiers

PMID27488925
OpenAlexW2494594043

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.