Evidence map›Paper›PMID 27488312›Full record

ArticleScientific reports2016

Generalized recovery algorithm for 3D super-resolution microscopy using rotating point spread functions.

Bo Shuang, Wenxiao Wang, Hao Shen, Lawrence J Tauzin, Charlotte Flatebo, Jianbo Chen, Nicholas A Moringo, Logan D C Bishop, Kevin F Kelly, Christy F Landes

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
10.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Super-resolution Microscopy for Biological Imaging.Advances in experimental medicine and biology · 2021
    Review
  4. A mechanistic examination of salting out in protein-polymer membrane interactions.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Bo ShuangDepartment of Chemistry, Rice University, Houston, TX 77251, USA.
Wenxiao WangDepartment of Electrical and Computer Engineering, Rice University, Houston, TX 77251, USA.
Hao ShenDepartment of Chemistry, Rice University, Houston, TX 77251, USA.
Lawrence J TauzinDepartment of Chemistry, Rice University, Houston, TX 77251, USA.
Charlotte FlateboDepartment of Chemistry, Rice University, Houston, TX 77251, USA.
Jianbo ChenDepartment of Electrical and Computer Engineering, Rice University, Houston, TX 77251, USA.
Nicholas A MoringoDepartment of Chemistry, Rice University, Houston, TX 77251, USA.
Logan D C BishopDepartment of Chemistry, Rice University, Houston, TX 77251, USA.
Kevin F KellyDepartment of Electrical and Computer Engineering, Rice University, Houston, TX 77251, USA.
Christy F LandesDepartment of Chemistry, Rice University, Houston, TX 77251, USA.
Rice University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Super-resolution microscopy with phase masks is a promising technique for 3D imaging and tracking. Due to the complexity of the resultant point spread functions, generalized recovery algorithms are still missing. We introduce a 3D super-resolution recovery algorithm that works for a variety of phase masks generating 3D point spread functions. A fast deconvolution process generates initial guesses, which are further refined by least squares fitting. Overfitting is suppressed using a machine learning determined threshold. Preliminary results on experimental data show that our algorithm can be used to super-localize 3D adsorption events within a porous polymer film and is useful for evaluating potential phase masks. Finally, we demonstrate that parallel computation on graphics processing units can reduce the processing time required for 3D recovery. Simulations reveal that, through desktop parallelization, the ultimate limit of real-time processing is possible. Our program is the first open source recovery program for generalized 3D recovery using rotating point spread functions.

Identifiers

PMID27488312
PMCPMC4973222
OpenAlexW2499209000

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.