Evidence map›Paper›PMID 27488242›Full record

ArticleScientific reports2016

First genetic linkage map of Taraxacum koksaghyz Rodin based on AFLP, SSR, COS and EST-SSR markers.

Marina Arias, Monica Hernandez, Naroa Remondegui, Koen Huvenaars, Peter van Dijk, Enrique Ritter

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
11.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Genome-Wide Analysis of theInternational journal of molecular sciences · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Marina AriasNeiker Tecnalia (Granja Modelo de Arkaute), Ctra. N1-Km 355, Arcaute (Alava) CP: 01192, Spain.
Monica HernandezNeiker Tecnalia (Granja Modelo de Arkaute), Ctra. N1-Km 355, Arcaute (Alava) CP: 01192, Spain.
Naroa RemondeguiNeiker Tecnalia (Granja Modelo de Arkaute), Ctra. N1-Km 355, Arcaute (Alava) CP: 01192, Spain.
Koen HuvenaarsKeyGene, Agro Business Park 90, Wageningen, 6708 PW, The Netherlands.
Peter van DijkKeyGene, Agro Business Park 90, Wageningen, 6708 PW, The Netherlands.
Enrique RitterNeiker Tecnalia (Granja Modelo de Arkaute), Ctra. N1-Km 355, Arcaute (Alava) CP: 01192, Spain.
KeyGene (Netherlands) · NLNEIKER, the Basque Institute for Agricultural Research and Development · ESTecnalia · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Taraxacum koksaghyz Rodin (TKS) has been studied in many occasions as a possible alternative source for natural rubber production of good quality and for inulin production. Some tire companies are already testing TKS tire prototypes. There are also many investigations on the production of bio-fuels from inulin and inulin applications for health improvement and in the food industry. A limited amount of genomic resources exist for TKS and particularly no genetic linkage map is available in this species. We have constructed the first TKS genetic linkage map based on AFLP, COS, SSR and EST-SSR markers. The integrated linkage map with eight linkage groups (LG), representing the eight chromosomes of Russian dandelion, has 185 individual AFLP markers from parent 1, 188 individual AFLP markers from parent 2, 75 common AFLP markers and 6 COS, 1 SSR and 63 EST-SSR loci. Blasting the EST-SSR sequences against known sequences from lettuce allowed a partial alignment of our TKS map with a lettuce map. Blast searches against plant gene databases revealed some homologies with useful genes for downstream applications in the future.

Indexed as

Amplified Fragment Length Polymorphism AnalysisChromosome MappingChromosomes, PlantExpressed Sequence TagsGenetic LinkageGenetic MarkersGenome, PlantLactucaMicrosatellite RepeatsMolecular Sequence AnnotationRubberSyntenyTaraxacumGenetic MarkersRubber

Identifiers

PMID27488242
PMCPMC4973268
OpenAlexW2477272161

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.