Evidence map›Paper›PMID 27488134›Full record

ArticleScientific reports2016

Australian human and parrot Chlamydia psittaci strains cluster within the highly virulent 6BC clade of this important zoonotic pathogen.

James Branley, Nathan L Bachmann, Martina Jelocnik, Garry S A Myers, Adam Polkinghorne

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 77 citations in OpenAlex.

  1. Current status and future directions ofFrontiers in veterinary science · 2026
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Draft genomes of novel avianMicrobial genomics · 2023
    Article
  6. Equine Psittacosis and the Emergence ofAnimals : an open access journal from MDPI · 2023
    Article
  7. Whole-genome sequencing ofMicrobial genomics · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Genome organization and genomics inFrontiers in cellular and infection microbiology · 2023
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Completing the Genome Sequence ofPathogens (Basel, Switzerland) · 2021
    Article
  17. Article
  18. Pathogens (Basel, Switzerland) · 2021
    Article
  19. Article
  20. A Review of Chlamydial Infections in Wild Birds.Pathogens (Basel, Switzerland) · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

James BranleyDepartment of Microbiology and Infectious Diseases, Nepean Hospital Penrith NSW, Australia.
Nathan L BachmannCentre for Animal Health Innovation, University of the Sunshine Coast, Sippy Downs, Australia.
Martina JelocnikCentre for Animal Health Innovation, University of the Sunshine Coast, Sippy Downs, Australia.
Garry S A MyersiThree Institute, University of Technology Sydney, NSW, Australia.
Adam PolkinghorneCentre for Animal Health Innovation, University of the Sunshine Coast, Sippy Downs, Australia.
University of the Sunshine Coast · AUNepean Hospital · AUUniversity of Technology Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chlamydia psittaci is an avian pathogen and zoonotic agent of atypical pneumonia. The most pathogenic C. psittaci strains cluster into the 6BC clade, predicted to have recently emerged globally. Exposure to infected parrots is a risk factor with limited evidence also of an indirect exposure risk. Genome sequencing was performed on six Australian human and a single avian C. psittaci strain isolated over a 9 year period. Only one of the five human patients had explicit psittacine contact. Genomics analyses revealed that the Australian C. psittaci strains are remarkably similar, clustering tightly within the C. psittaci 6BC clade suggested to have been disseminated by South America parrot importation. Molecular clock analysis using the newly sequenced C. psittaci genomes predicted the emergence of the 6BC clade occurring approximately 2,000 years ago. These findings reveal the potential for an Australian natural reservoir of C. psittaci 6BC strains. These strains can also be isolated from seriously ill patients without explicit psittacine contact. The apparent recent and global spread of C. psittaci 6BC strains raises important questions over how this happened. Further studies may reveal whether the dissemination of this important zoonotic pathogen is linked to Australian parrot importation rather than parrots from elsewhere.

Indexed as

Evolution, MolecularAnimalsAustraliaChlamydophila psittaciGenome, BacterialHumansParrotsPhylogenyPolymorphism, Single NucleotidePsittacosisZoonoses

Identifiers

PMID27488134
PMCPMC4973220
OpenAlexW2497640358

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.