Evidence map›Paper›PMID 27488021›Full record

ArticleScientific reports2016

Assembly of Bak homodimers into higher order homooligomers in the mitochondrial apoptotic pore.

Tirtha Mandal, Seungjin Shin, Sreevidya Aluvila, Hui-Chen Chen, Carter Grieve, Jun-Yong Choe, Emily H Cheng, Eric J Hustedt, Kyoung Joon Oh

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Review
  2. Mechanisms of BCL-2 family proteins in mitochondrial apoptosis.Nature reviews. Molecular cell biology · 2023
    Review
  3. Apoptotic mitochondrial poration by a growing list of pore-forming BCL-2 family proteins.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. BAK core dimers bind lipids and can be bridged by them.Nature structural & molecular biology · 2020
    Article
  10. Article
  11. Article
  12. BAX, BAK, and BOK: A Coming of Age for the BCL-2 Family Effector Proteins.Cold Spring Harbor perspectives in biology · 2020
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Pore formation by dimeric Bak and Bax: an unusual pore?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Tirtha MandalDepartment of Biochemistry and Molecular Biology, Rosalind Franklin University of Medicine and Science, North Chicago, Illinois 60064, USA.
Seungjin ShinDepartment of Biochemistry and Molecular Biology, Rosalind Franklin University of Medicine and Science, North Chicago, Illinois 60064, USA.
Sreevidya AluvilaDepartment of Biochemistry and Molecular Biology, Rosalind Franklin University of Medicine and Science, North Chicago, Illinois 60064, USA.
Hui-Chen ChenHuman Oncology and Pathogenesis Program and Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Carter GrieveDepartment of Biochemistry and Molecular Biology, Rosalind Franklin University of Medicine and Science, North Chicago, Illinois 60064, USA.
Jun-Yong ChoeDepartment of Biochemistry and Molecular Biology, Rosalind Franklin University of Medicine and Science, North Chicago, Illinois 60064, USA.
Emily H ChengHuman Oncology and Pathogenesis Program and Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Eric J HustedtMolecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
Kyoung Joon OhDepartment of Biochemistry and Molecular Biology, Rosalind Franklin University of Medicine and Science, North Chicago, Illinois 60064, USA.

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
TR&D Project 3P41EB001980 · NIBIB · MEDICAL COLLEGE OF WISCONSIN · PI KLUG, CANDICE S · 2003 to 2017
$16.3M
Apoptotic Network Integrated at the MitochondrionR01CA125562 · NCI · WASHINGTON UNIVERSITY · PI CHENG, EMILY H · 2007 to 2020
$3.4M
BAX/BAK-Mediated Mitochondrial Outer Membrane Permeabilization in ApoptosisR01GM097508 · NIGMS · ROSALIND FRANKLIN UNIV OF MEDICINE & SCI · PI OH, KYOUNG JOON · 2012 to 2016
$1.5M
Acquisition of a Bruker E580 Pulse EPR SpectrometerS10RR022422 · NCRR · MEDICAL COLLEGE OF WISCONSIN · PI KLUG, CANDICE S · 2007 to 2007
$500k
Acquisition of Q-band Pulsed EPR CapabilityS10OD011937 · OD · MEDICAL COLLEGE OF WISCONSIN · PI KLUG, CANDICE S · 2012 to 2012
$381k
NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA125562NCRR NIH HHS S10 RR022422NIBIB NIH HHS P41 EB001980NIGMS NIH HHS R01 GM097508NIH HHS S10 OD011937
6 · The paper itself

Abstract

In mitochondrial apoptosis, Bak is activated by death signals to form pores of unknown structure on the mitochondrial outer membrane via homooligomerization. Cytochrome c and other apoptotic factors are released from the intermembrane space through these pores, initiating downstream apoptosis events. Using chemical crosslinking and double electron electron resonance (DEER)-derived distance measurements between specific structural elements in Bak, here we clarify how the Bak pore is assembled. We propose that previously described BH3-in-groove homodimers (BGH) are juxtaposed via the 'α3/α5' interface, in which the C-termini of helices α3 and α5 are in close proximity between two neighboring Bak homodimers. This interface is observed concomitantly with the well-known 'α6:α6' interface. We also mapped the contacts between Bak homodimers and the lipid bilayer based on EPR spectroscopy topology studies. Our results suggest a model for the lipidic Bak pore, whereby the mitochondrial targeting C-terminal helix does not change topology to accommodate the lining of the pore lumen by BGH.

Indexed as

AnimalsApoptosisbcl-2 Homologous Antagonist-Killer ProteinBinding SitesCells, CulturedCrystallography, X-RayElectron Spin Resonance SpectroscopyFibroblastsLipid BilayersMiceMitochondriaModels, MolecularProtein BindingProtein MultimerizationProtein Structure, SecondaryProtein Structure, TertiaryBak1 protein, mousebcl-2 Homologous Antagonist-Killer ProteinLipid Bilayers

Identifiers

PMID27488021
PMCPMC4973285

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.